C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168922 Vars2-002 ENSMUSG00000038838 10090 - 17:35656390-35663484 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168922 3.016±0.73 5.684±0.00 1.968±0.00 2.083±0.34 3.756±0.55 3.320±0.64 2.819±0.91 2.013±0.97 3.821±0.57 1.347±0.22 5.319±0.70 1.853±0.50 0.935±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321897 VARS2-001 protein_coding Homo_sapiens 0 1681
ENST00000383369 VARSL-001 protein_coding Homo_sapiens 0 1681
ENST00000383540 VARS2-001 protein_coding Homo_sapiens 0 1676
ENST00000415079 VARS2-001 protein_coding Homo_sapiens 0 1681
ENST00000428577 VARSL-001 protein_coding Homo_sapiens 0 1687
ENST00000450090 VARS2-001 protein_coding Homo_sapiens 0 1676
ENST00000462127 VARSL-003 retained_intron Homo_sapiens 0 963
ENST00000462424 VARS2-005 retained_intron Homo_sapiens 0 340
ENST00000462755 VARSL-005 retained_intron Homo_sapiens 0 351
ENST00000462929 VARS2-004 processed_transcript Homo_sapiens 0 859
ENST00000463160 VARSL-010 processed_transcript Homo_sapiens 0 845
ENST00000463673 VARS2-010 processed_transcript Homo_sapiens 0 845
ENST00000464084 VARSL-002 retained_intron Homo_sapiens 0 1687
ENST00000464843 VARSL-003 retained_intron Homo_sapiens 0 968
ENST00000469311 VARS2-002 retained_intron Homo_sapiens 0 1681
ENST00000469358 VARS2-003 retained_intron Homo_sapiens 0 963
ENST00000469489 VARSL-002 retained_intron Homo_sapiens 0 1681
ENST00000469818 VARS2-005 retained_intron Homo_sapiens 0 340
ENST00000473449 VARS2-003 retained_intron Homo_sapiens 0 968
ENST00000473916 VARS2-005 retained_intron Homo_sapiens 0 340
ENST00000475174 VARS2-004 processed_transcript Homo_sapiens 0 848
ENST00000475673 VARS2-002 retained_intron Homo_sapiens 0 1676
ENST00000476162 VARS2-004 processed_transcript Homo_sapiens 0 859
ENST00000476604 VARSL-010 processed_transcript Homo_sapiens 0 845
ENST00000477288 VARS2-002 retained_intron Homo_sapiens 0 1681
ENST00000480082 VARS2-005 retained_intron Homo_sapiens 0 340
ENST00000481398 VARS2-010 processed_transcript Homo_sapiens 0 833
ENST00000482947 VARSL-004 processed_transcript Homo_sapiens 0 859
ENST00000486378 VARS2-003 retained_intron Homo_sapiens 0 963
ENST00000489340 VARS2-004 processed_transcript Homo_sapiens 0 848
ENST00000492221 VARSL-004 processed_transcript Homo_sapiens 0 859
ENST00000493326 VARS2-002 retained_intron Homo_sapiens 0 1676
ENST00000493915 VARS2-010 processed_transcript Homo_sapiens 0 833
ENST00000495393 VARS2-003 retained_intron Homo_sapiens 0 968
ENST00000498621 VARSL-005 retained_intron Homo_sapiens 0 340
ENST00000541562 VARS2-201 protein_coding Homo_sapiens 0 1681
ENST00000542001 VARS2-202 protein_coding Homo_sapiens 0 1648
ENST00000546854 VARS2-203 protein_coding Homo_sapiens 0 1681
ENST00000547340 VARS2-203 protein_coding Homo_sapiens 0 1642
ENST00000548165 VARSL-202 protein_coding Homo_sapiens 0 1687
ENST00000548842 VARSL-201 protein_coding Homo_sapiens 0 1653
ENST00000549458 VARS2-204 protein_coding Homo_sapiens 0 1676
ENST00000549900 VARSL-204 protein_coding Homo_sapiens 0 1648
ENST00000550773 VARS2-201 protein_coding Homo_sapiens 0 1642
ENST00000551709 VARS2-204 protein_coding Homo_sapiens 0 1648
ENST00000552560 VARS2-202 protein_coding Homo_sapiens 0 1676
ENST00000553245 VARSL-203 protein_coding Homo_sapiens 0 1681

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