C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169093 Vars2-011 ENSMUSG00000038838 10090 - 17:35659688-35661969 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006418 IEA tRNA aminoacylation for protein translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321897 VARS2-001 protein_coding Homo_sapiens 0 514
ENST00000383369 VARSL-001 protein_coding Homo_sapiens 0 514
ENST00000383540 VARS2-001 protein_coding Homo_sapiens 0 508
ENST00000415079 VARS2-001 protein_coding Homo_sapiens 0 514
ENST00000428577 VARSL-001 protein_coding Homo_sapiens 0 520
ENST00000450090 VARS2-001 protein_coding Homo_sapiens 0 508
ENST00000462127 VARSL-003 retained_intron Homo_sapiens 0 377
ENST00000462929 VARS2-004 processed_transcript Homo_sapiens 0 377
ENST00000463160 VARSL-010 processed_transcript Homo_sapiens 0 300
ENST00000463673 VARS2-010 processed_transcript Homo_sapiens 0 300
ENST00000464084 VARSL-002 retained_intron Homo_sapiens 0 520
ENST00000464843 VARSL-003 retained_intron Homo_sapiens 0 381
ENST00000469311 VARS2-002 retained_intron Homo_sapiens 0 514
ENST00000469358 VARS2-003 retained_intron Homo_sapiens 0 377
ENST00000469489 VARSL-002 retained_intron Homo_sapiens 0 514
ENST00000473449 VARS2-003 retained_intron Homo_sapiens 0 387
ENST00000475174 VARS2-004 processed_transcript Homo_sapiens 0 387
ENST00000475673 VARS2-002 retained_intron Homo_sapiens 0 508
ENST00000476162 VARS2-004 processed_transcript Homo_sapiens 0 377
ENST00000476604 VARSL-010 processed_transcript Homo_sapiens 0 300
ENST00000477288 VARS2-002 retained_intron Homo_sapiens 0 514
ENST00000481398 VARS2-010 processed_transcript Homo_sapiens 0 294
ENST00000482947 VARSL-004 processed_transcript Homo_sapiens 0 381
ENST00000486378 VARS2-003 retained_intron Homo_sapiens 0 377
ENST00000489340 VARS2-004 processed_transcript Homo_sapiens 0 387
ENST00000492221 VARSL-004 processed_transcript Homo_sapiens 0 377
ENST00000493326 VARS2-002 retained_intron Homo_sapiens 0 508
ENST00000493915 VARS2-010 processed_transcript Homo_sapiens 0 294
ENST00000495393 VARS2-003 retained_intron Homo_sapiens 0 387
ENST00000541562 VARS2-201 protein_coding Homo_sapiens 0 514
ENST00000542001 VARS2-202 protein_coding Homo_sapiens 0 514
ENST00000546854 VARS2-203 protein_coding Homo_sapiens 0 514
ENST00000547340 VARS2-203 protein_coding Homo_sapiens 0 508
ENST00000548165 VARSL-202 protein_coding Homo_sapiens 0 520
ENST00000548842 VARSL-201 protein_coding Homo_sapiens 0 520
ENST00000549458 VARS2-204 protein_coding Homo_sapiens 0 508
ENST00000549900 VARSL-204 protein_coding Homo_sapiens 0 514
ENST00000550773 VARS2-201 protein_coding Homo_sapiens 0 508
ENST00000551709 VARS2-204 protein_coding Homo_sapiens 0 514
ENST00000552560 VARS2-202 protein_coding Homo_sapiens 0 508
ENST00000553245 VARSL-203 protein_coding Homo_sapiens 0 514

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