C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: USP6 N-terminal like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114937 Usp6nl-001 ENSMUSG00000039046 10090 + 2:6322667-6446390 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114937 1.312±0.72 2.447±0.00 2.782±0.46 2.356±0.61 1.349±0.51 3.367±0.92 0.539±0.17 2.300±0.80 2.373±0.96 3.413±1.04 0.646±0.14 3.760±1.22 2.651±0.33 1.890±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0002 VISTA 2:5960988-6562915
CIL_0000RW CIL_0000RW_0002 CGP 2:6322667-7509563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 ISS Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0007030 ISS Golgi organization
GO:0031410 ISS cytoplasmic vesicle
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0035526 ISS retrograde transport, plasma membrane to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261890 RAB11A-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000277575 USP6NL-201 protein_coding Homo_sapiens 0 2097
ENST00000379237 USP6NL-005 protein_coding Homo_sapiens 0 2097
ENST00000394807 ZBTB3-001 protein_coding Homo_sapiens 0.00002 57
ENST00000401725 AC019109.1-001 processed_pseudogene Homo_sapiens 0.000000004 68
ENST00000523988 SLC25A30-004 retained_intron Homo_sapiens 0.00000000002 77
ENST00000578223 PER1-011 retained_intron Homo_sapiens 0.0000000001 71
ENST00000601372 ZNF558-001 protein_coding Homo_sapiens 0.000003 60
ENST00000606752 USP6NL-002 processed_transcript Homo_sapiens 0 250
ENST00000609104 USP6NL-001 protein_coding Homo_sapiens 0 2444

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