C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: USP6 N-terminal like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042503 Usp6nl-003 ENSMUSG00000039046 10090 + 2:6352733-6443494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042503
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042503 2.387±1.26 1.749±0.61 0.588±0.00 3.901±1.00 1.906±0.46 2.971±0.75 0.402±0.09 1.468±0.48 1.882±0.75 3.083±0.37 0.186±0.04 3.104±0.87 4.106±2.57 2.832±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0002 VISTA 2:5960988-6562915
CIL_0000RW CIL_0000RW_0002 CGP 2:6322667-7509563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 ISS Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0007030 ISS Golgi organization
GO:0017137 IEA Rab GTPase binding
GO:0019068 IEA virion assembly
GO:0031410 ISS cytoplasmic vesicle
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IEA positive regulation of GTP catabolic process
GO:0035526 ISS retrograde transport, plasma membrane to Golgi
GO:0048227 IEA plasma membrane to endosome transport
GO:1903358 IEA regulation of Golgi organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277575 USP6NL-201 protein_coding Homo_sapiens 0 2098
ENST00000379237 USP6NL-005 protein_coding Homo_sapiens 0 2263
ENST00000609104 USP6NL-001 protein_coding Homo_sapiens 0 2097

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