C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: integrin alpha 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039115 Itga9 10090 + 9:118606690-118901003 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044165 Itga9-001 118606690-118901003 protein_coding
  ENSMUST00000124360 Itga9-002 118711657-118897723 protein_coding
  ENSMUST00000124422 Itga9-005 118839628-118871940 processed_transcript
  ENSMUST00000125021 Itga9-003 118685835-118807231 processed_transcript
  ENSMUST00000149150 Itga9-004 118807284-118843848 protein_coding
  ENSMUST00000155437 Itga9-006 118872069-118897312 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044165ENSMUST00000124360ENSMUST00000124422
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044165 3.720±1.83 22.876±3.31 13.518±1.43 1.084±0.38 2.867±0.81 6.292±0.56 8.676±0.22 4.223±0.16 2.312±0.58 17.353±1.04 0.700±0.11 22.201±2.91 2.811±1.06 0.555±0.05
ENSMUST00000124360 N/A N/A N/A N/A N/A N/A N/A N/A 0.839±0.00 N/A N/A N/A 3.128±1.46 0.512±0.04
ENSMUST00000124422 N/A 39.392±0.00 N/A N/A 5.091±1.16 N/A N/A N/A N/A N/A N/A N/A N/A 1.882±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L2 CIL_0008L2_0002 VISTA 9:118017970-118619794
CIL_0008CZ CIL_0008CZ_0002 VISTA 9:118558597-119161666
CIL_00099X CIL_00099X_0002 VISTA 9:118563323-119168147
CIL_0005VQ CIL_0005VQ_0002 CGP 9:118606690-119043998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0009925 IDA basal plasma membrane
GO:0016020 IEA membrane
GO:0030593 IGI neutrophil chemotaxis
GO:0034679 IEA integrin alpha9-beta1 complex
GO:0042060 IEA wound healing
GO:0043236 IEA laminin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000144668 ITGA9 integrin, alpha 9 protein_coding Homo_sapiens

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