C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005VQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144668-ENSG00000144677 CGP 9606 3:37452115-37984469
GeneTranscriptPositionBiotype
ENSG00000144668 (ITGA9)
integrin, alpha 9 		ENST00000264741 (ITGA9-001) 37452119-37823514 protein_coding
ENST00000411817 (ITGA9-004) 37780015-37819390 protein_coding
ENST00000422441 (ITGA9-002) 37452115-37629519 protein_coding
ENST00000461533 (ITGA9-003) 37683876-37732999 retained_intron
ENSG00000144677 (CTDSPL)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 		ENST00000273179 (CTDSPL-001) 37862174-37984469 protein_coding
ENST00000310189 (CTDSPL-005) 37954417-37981125 processed_transcript
ENST00000416688 (CTDSPL-007) 37964579-37968432 protein_coding
ENST00000435525 (CTDSPL-003) 37862178-37947171 nonsense_mediated_decay
ENST00000436654 (CTDSPL-009) 37975773-37982384 protein_coding
ENST00000443503 (CTDSPL-002) 37861960-37984469 protein_coding
ENST00000447745 (CTDSPL-008) 37964637-37984468 protein_coding
ENST00000486978 (CTDSPL-004) 37944714-37975786 processed_transcript
ENSG00000235257 (ITGA9-AS1)
ITGA9 antisense RNA 1 		ENST00000366441 (ITGA9-AS1-003) 37818277-37861765 antisense
ENST00000420870 (ITGA9-AS1-005) 37790865-37861774 antisense
ENST00000429532 (ITGA9-AS1-008) 37808723-37861720 antisense
ENST00000430620 (ITGA9-AS1-007) 37818733-37861720 antisense
ENST00000438136 (ITGA9-AS1-002) 37753689-37861738 antisense
ENST00000439246 (ITGA9-AS1-001) 37805829-37821100 retained_intron
ENST00000445429 (ITGA9-AS1-009) 37806078-37861728 antisense
ENST00000449586 (ITGA9-AS1-010) 37745432-37753997 antisense
ENST00000450990 (ITGA9-AS1-006) 37790751-37861748 antisense
ENST00000457661 (ITGA9-AS1-004) 37808712-37861780 antisense
ENST00000594579 (ITGA9-AS1-011) 37820916-37835163 antisense
ENST00000608505 (ITGA9-AS1-012) 37808727-37821410 antisense
ENST00000614028 (ITGA9-AS1-013) 37808496-37821100 antisense
ENSG00000235482 (RPL21P135)
ribosomal protein L21 pseudogene 135 		ENST00000442539 (RPL21P135-001) 37748110-37748900 processed_pseudogene
ENSG00000236411 (NDUFAF4P3)
NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 3 		ENST00000456468 (NDUFAF4P3-001) 37789921-37790445 processed_pseudogene
ENSG00000239105 (RNU7-73P)
RNA, U7 small nuclear 73 pseudogene 		ENST00000458743 (RNU7-73P-201) 37573151-37573213 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005VQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039115-ENSMUSG00000047409 CGP 10090 9:118606690-119043998
GeneTranscriptPositionBiotype
ENSMUSG00000039115 (Itga9)
integrin alpha 9 		ENSMUST00000044165 (Itga9-001) 118606690-118901003 protein_coding
ENSMUST00000124360 (Itga9-002) 118711657-118897723 protein_coding
ENSMUST00000124422 (Itga9-005) 118839628-118871940 processed_transcript
ENSMUST00000125021 (Itga9-003) 118685835-118807231 processed_transcript
ENSMUST00000149150 (Itga9-004) 118807284-118843848 protein_coding
ENSMUST00000155437 (Itga9-006) 118872069-118897312 processed_transcript
ENSMUSG00000047409 (Ctdspl)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 		ENSMUST00000073109 (Ctdspl-001) 118926453-119043998 protein_coding
ENSMUST00000172464 (Ctdspl-003) 118926862-119040649 protein_coding
ENSMUST00000174132 (Ctdspl-002) 119033001-119040909 retained_intron
ENSMUST00000174841 (Ctdspl-004) 118929867-119033628 processed_transcript
ENSMUSG00000065513 (Mir26a-1)
microRNA 26a-1 		ENSMUST00000083579 (Mir26a-1-201) 119031796-119031885 miRNA
ENSMUSG00000066270 (Gm10157)
predicted gene 10157 		ENSMUST00000139408 (Gm10157-001) 118837613-118837955 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VQ_0001ENSG00000144668ENST00000264741ENST00000411817ENST00000422441ENST00000461533ENSG00000144677ENST00000273179ENST00000310189ENST00000416688ENST00000435525ENST00000436654ENST00000443503ENST00000447745ENST00000486978ENSG00000235257ENST00000366441ENST00000420870ENST00000429532ENST00000430620ENST00000438136ENST00000439246ENST00000445429ENST00000449586ENST00000450990ENST00000457661ENST00000594579ENST00000608505ENST00000614028ENSG00000235482ENST00000442539ENSG00000236411ENST00000456468ENSG00000239105ENST00000458743CIL_0005VQ_0002ENSMUSG00000039115ENSMUST00000044165ENSMUST00000124360ENSMUST00000124422ENSMUST00000125021ENSMUST00000149150ENSMUST00000155437ENSMUSG00000047409ENSMUST00000073109ENSMUST00000172464ENSMUST00000174132ENSMUST00000174841ENSMUSG00000065513ENSMUST00000083579ENSMUSG00000066270ENSMUST00000139408
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VQ_0001ENSG00000144668ENST00000264741ENST00000422441ENSG00000144677ENST00000273179ENST00000436654ENST00000443503ENSG00000235257ENST00000366441ENST00000439246ENST00000608505ENSG00000235482ENST00000442539ENSG00000236411ENST00000456468ENSG00000239105ENST00000458743CIL_0005VQ_0002ENSMUSG00000039115ENSMUST00000044165ENSMUST00000124360ENSMUST00000124422ENSMUSG00000047409ENSMUST00000073109ENSMUST00000174132ENSMUSG00000065513ENSMUST00000083579ENSMUSG00000066270ENSMUST00000139408
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144668 ENST00000264741 7.275±0.00 15.682±0.00 0.572±0.00 0.799±0.13 3.416±0.59 2.763±0.41 6.245±2.60 3.037±0.12 3.179±0.10 2.987±0.32 0.632±0.00 2.666±1.19 3.637±0.85 11.773±9.89
ENST00000411817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422441 N/A N/A N/A N/A 4.333±0.00 N/A N/A N/A 7.848±0.00 N/A N/A 2.339±0.00 N/A N/A
ENST00000461533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144677 ENST00000273179 4.303±0.00 2.567±0.00 N/A 1.166±0.94 4.193±2.82 6.547±0.00 4.122±0.00 9.486±0.00 N/A 4.548±0.00 0.791±0.59 4.214±1.67 8.486±2.93 4.460±2.62
ENST00000310189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436654 N/A N/A N/A N/A N/A N/A N/A 2.197±0.00 N/A N/A N/A N/A N/A N/A
ENST00000443503 N/A 1.729±0.00 N/A N/A N/A 0.948±0.00 3.784±3.04 8.370±0.00 2.497±0.00 4.004±0.00 N/A 2.403±1.08 5.864±1.63 3.185±1.98
ENST00000447745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235257 ENST00000366441 N/A N/A N/A 4.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439246 N/A N/A 0.534±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.500±0.00 N/A N/A
ENST00000614028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235482 ENST00000442539 0.140±0.00 0.271±0.00 N/A 0.169±0.00 0.572±0.00 0.268±0.00 0.138±0.00 0.214±0.01 0.072±0.04 0.282±0.16 0.082±0.00 0.131±0.14 N/A 0.206±0.05
ENSG00000236411 ENST00000456468 0.045±0.00 0.419±0.00 N/A 0.343±0.20 0.858±0.48 0.555±0.01 0.107±0.00 0.410±0.00 0.692±0.00 0.370±0.00 0.186±0.00 0.506±0.27 0.231±0.07 0.831±0.81
ENSG00000239105 ENST00000458743 N/A N/A N/A 0.588±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039115 ENSMUST00000044165 3.720±1.83 22.876±3.31 13.518±1.43 1.084±0.38 2.867±0.81 6.292±0.56 8.676±0.22 4.223±0.16 2.312±0.58 17.353±1.04 0.700±0.11 22.201±2.91 2.811±1.06 0.555±0.05
ENSMUST00000124360 N/A N/A N/A N/A N/A N/A N/A N/A 0.839±0.00 N/A N/A N/A 3.128±1.46 0.512±0.04
ENSMUST00000124422 N/A 39.392±0.00 N/A N/A 5.091±1.16 N/A N/A N/A N/A N/A N/A N/A N/A 1.882±0.41
ENSMUST00000125021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047409 ENSMUST00000073109 13.498±13.28 6.876±2.91 8.551±3.25 4.760±0.13 7.165±3.07 9.010±5.64 1.205±0.30 4.971±2.89 1.390±1.21 13.448±8.47 0.228±0.02 4.995±2.74 15.095±6.16 0.798±0.00
ENSMUST00000172464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.752±0.54 N/A N/A
ENSMUST00000174841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065513 ENSMUST00000083579 N/A N/A N/A N/A N/A N/A N/A 6341.180±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000066270 ENSMUST00000139408 0.711±0.22 N/A 0.181±0.01 0.104±0.06 0.871±0.66 0.699±0.21 1.735±0.49 0.989±0.36 0.666±0.76 0.969±0.26 0.352±0.20 0.583±0.31 0.157±0.11 3.386±0.67

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