C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044165 Itga9-001 ENSMUSG00000039115 10090 + 9:118606690-118901003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044165
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044165 3.720±1.83 22.876±3.31 13.518±1.43 1.084±0.38 2.867±0.81 6.292±0.56 8.676±0.22 4.223±0.16 2.312±0.58 17.353±1.04 0.700±0.11 22.201±2.91 2.811±1.06 0.555±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L2 CIL_0008L2_0002 VISTA 9:118017970-118619794
CIL_0008CZ CIL_0008CZ_0002 VISTA 9:118558597-119161666
CIL_00099X CIL_00099X_0002 VISTA 9:118563323-119168147
CIL_0005VQ CIL_0005VQ_0002 CGP 9:118606690-119043998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0009925 IDA basal plasma membrane
GO:0016020 IEA membrane
GO:0030593 IGI neutrophil chemotaxis
GO:0034679 IEA integrin alpha9-beta1 complex
GO:0042060 IEA wound healing
GO:0043236 IEA laminin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264741 ITGA9-001 protein_coding Homo_sapiens 0 3866
ENST00000411817 ITGA9-004 protein_coding Homo_sapiens 0 527
ENST00000422441 ITGA9-002 protein_coding Homo_sapiens 0 1993
ENST00000461533 ITGA9-003 retained_intron Homo_sapiens 0 300

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