C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon-stimulated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039236 Isg20 10090 + 7:78913424-78920362 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038142 Isg20-001 78913765-78920362 protein_coding
  ENSMUST00000118867 Isg20-003 78913424-78920212 protein_coding
  ENSMUST00000120331 Isg20-004 78914235-78920349 protein_coding
  ENSMUST00000121645 Isg20-002 78913458-78920307 protein_coding
  ENSMUST00000133042 Isg20-005 78913981-78917018 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038142ENSMUST00000118867ENSMUST00000120331ENSMUST00000121645ENSMUST00000133042
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038142 8.634±0.35 0.997±0.40 17.404±1.35 0.223±0.00 3.957±2.60 9.325±2.22 5.725±4.04 2.391±0.50 11.932±10.47 17.124±0.66 0.573±0.08 14.679±4.90 75.520±25.66 14.822±1.00
ENSMUST00000118867 3.163±0.00 2.480±1.21 N/A 0.154±0.00 5.085±0.86 8.778±0.97 N/A N/A 0.850±0.06 N/A 0.202±0.00 28.744±8.79 N/A 50.025±13.36
ENSMUST00000120331 3.681±1.00 1.857±0.62 N/A 0.224±0.06 3.864±1.22 11.643±2.07 15.188±12.69 2.165±0.58 22.735±23.58 18.133±9.74 0.542±0.10 15.843±5.71 54.807±4.13 N/A
ENSMUST00000121645 N/A 0.525±0.00 N/A 0.351±0.00 1.858±0.42 3.205±0.00 0.628±0.00 0.863±0.00 0.427±0.22 2.402±0.00 0.214±0.06 N/A N/A 57.012±2.03
ENSMUST00000133042 N/A 0.580±0.12 N/A 0.112±0.00 1.761±0.09 N/A N/A N/A 3.330±3.74 4.988±1.59 N/A 6.363±1.08 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011F CIL_00011F_0002 CGP 7:78895854-78920362
CIL_00011K CIL_00011K_0002 CGP 7:78913424-79115099

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000175 IEA 3'-5'-exoribonuclease activity
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0004527 ISS exonuclease activity
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0006364 IEA rRNA processing
GO:0006401 IEA RNA catabolic process
GO:0008310 IEA single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008859 IEA exoribonuclease II activity
GO:0009615 IEA response to virus
GO:0015030 ISS Cajal body
GO:0016605 IEA PML body
GO:0030619 ISS U1 snRNA binding
GO:0030620 ISS U2 snRNA binding
GO:0034511 ISS U3 snoRNA binding
GO:0045071 IEA negative regulation of viral genome replication
GO:0045087 IEA innate immune response
GO:0046872 IEA metal ion binding
GO:0051607 ISS defense response to virus
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000172183 ISG20 interferon stimulated exonuclease gene 20kDa protein_coding Homo_sapiens

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