C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: raftlin lipid raft linker 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039316 Rftn1 10090 - 17:49992257-50190674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044503 Rftn1-001 49992257-50190674 protein_coding
  ENSMUST00000113195 Rftn1-002 49993260-50094332 protein_coding
  ENSMUST00000156094 Rftn1-003 50036623-50190497 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044503ENSMUST00000113195ENSMUST00000156094
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044503 1.167±0.11 1.338±0.20 0.410±0.00 N/A 4.985±3.37 1.133±0.56 N/A 1.222±0.71 0.264±0.16 2.263±0.50 0.387±0.10 1.853±1.36 0.345±0.32 0.216±0.05
ENSMUST00000113195 8.210±0.81 N/A 1.297±0.30 2.067±0.17 8.916±1.99 2.216±0.32 10.805±2.19 2.510±0.83 1.249±0.67 5.995±0.42 3.074±0.41 5.353±1.01 1.162±0.96 0.880±0.21
ENSMUST00000156094 7.950±1.66 15.462±1.89 1.065±0.24 1.617±0.30 30.404±16.55 5.628±2.25 9.149±2.44 4.203±1.20 0.896±0.31 14.929±6.67 1.652±0.37 14.729±9.34 0.911±0.52 0.640±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VC CIL_0002VC_0003 CGP 17:49992257-50293599

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001765 IEA membrane raft assembly
GO:0002457 IMP T cell antigen processing and presentation
GO:0003725 ISO double-stranded RNA binding
GO:0005737 ISO cytoplasm
GO:0005768 ISO endosome
GO:0005886 ISO plasma membrane
GO:0032596 IMP protein transport into membrane raft
GO:0032620 IMP interleukin-17 production
GO:0033227 ISO dsRNA transport
GO:0034138 ISO toll-like receptor 3 signaling pathway
GO:0040007 IEA growth
GO:0043234 ISO protein complex
GO:0043330 ISO response to exogenous dsRNA
GO:0045121 IEA membrane raft
GO:0050852 IMP T cell receptor signaling pathway
GO:0050853 IEA B cell receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome
GO:1903044 IMP protein localization to membrane raft

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070831 rftn1a raftlin, lipid raft linker 1a protein_coding Danio_rerio
ENSDARG00000086499 RFTN1 (2 of 2) raftlin, lipid raft linker 1 protein_coding Danio_rerio
ENSG00000131378 RFTN1 raftlin, lipid raft linker 1 protein_coding Homo_sapiens

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