C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: raftlin lipid raft linker 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113195 Rftn1-002 ENSMUSG00000039316 10090 - 17:49993260-50094332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113195
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113195 8.210±0.81 1.297±0.30 2.067±0.17 8.916±1.99 2.216±0.32 10.805±2.19 2.510±0.83 1.249±0.67 5.995±0.42 3.074±0.41 5.353±1.01 1.162±0.96 0.880±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VC CIL_0002VC_0003 CGP 17:49992257-50293599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005737 ISO cytoplasm
GO:0005768 ISO endosome
GO:0005886 ISO plasma membrane
GO:0033227 ISO dsRNA transport
GO:0034138 ISO toll-like receptor 3 signaling pathway
GO:0043234 ISO protein complex
GO:0043330 ISO response to exogenous dsRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334133 RFTN1-001 protein_coding Homo_sapiens 0 826
ENST00000432519 RFTN1-002 protein_coding Homo_sapiens 0 826
ENST00000483671 RFTN1-003 processed_transcript Homo_sapiens 0 723
ENST00000607320 RFTN1-012 nonsense_mediated_decay Homo_sapiens 0 257

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