C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: raftlin lipid raft linker 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044503 Rftn1-001 ENSMUSG00000039316 10090 - 17:49992257-50190674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044503
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044503 1.167±0.11 1.338±0.20 0.410±0.00 4.985±3.37 1.133±0.56 1.222±0.71 0.264±0.16 2.263±0.50 0.387±0.10 1.853±1.36 0.345±0.32 0.216±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VC CIL_0002VC_0003 CGP 17:49992257-50293599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001765 IEA membrane raft assembly
GO:0002457 IMP T cell antigen processing and presentation
GO:0003725 ISO double-stranded RNA binding
GO:0005737 ISO cytoplasm
GO:0005768 ISO endosome
GO:0005886 ISO plasma membrane
GO:0032596 IMP protein transport into membrane raft
GO:0032620 IMP interleukin-17 production
GO:0033227 ISO dsRNA transport
GO:0034138 ISO toll-like receptor 3 signaling pathway
GO:0040007 IEA growth
GO:0043234 ISO protein complex
GO:0043330 ISO response to exogenous dsRNA
GO:0045121 IEA membrane raft
GO:0050852 IMP T cell receptor signaling pathway
GO:0050853 IEA B cell receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome
GO:1903044 IMP protein localization to membrane raft

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334133 RFTN1-001 protein_coding Homo_sapiens 0 1232
ENST00000432519 RFTN1-002 protein_coding Homo_sapiens 0 972
ENST00000483671 RFTN1-003 processed_transcript Homo_sapiens 0 723
ENST00000607320 RFTN1-012 nonsense_mediated_decay Homo_sapiens 0 257

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