C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine repetitive matrix 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039860 Srrm3 10090 + 5:135806890-135874772 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000013615 Srrm3-003 135818106-135873109 nonsense_mediated_decay
  ENSMUST00000126232 Srrm3-005 135806897-135852219 protein_coding
  ENSMUST00000135615 Srrm3-006 135854414-135857509 retained_intron
  ENSMUST00000144211 Srrm3-001 135818106-135874772 protein_coding
  ENSMUST00000146038 Srrm3-004 135806890-135841953 retained_intron
  ENSMUST00000150566 Srrm3-007 135866617-135868209 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013615ENSMUST00000126232ENSMUST00000135615ENSMUST00000144211ENSMUST00000146038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013615 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A 0.032±0.00 0.093±0.00 N/A
ENSMUST00000126232 N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A
ENSMUST00000135615 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144211 0.024±0.01 N/A 0.012±0.01 13.422±0.55 0.027±0.01 N/A 0.018±0.00 0.015±0.00 0.009±0.00 0.027±0.01 0.034±0.00 0.036±0.02 0.145±0.00 0.053±0.01
ENSMUST00000146038 0.215±0.11 1.555±0.44 0.012±0.00 N/A 0.673±0.51 0.788±0.21 0.106±0.02 0.246±0.12 0.160±0.12 0.523±0.13 N/A 0.462±0.27 0.025±0.01 0.475±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NT CIL_0006NT_0002 CGP 5:135778480-135874772
CIL_0006NG CIL_0006NG_0002 CGP 5:135806890-135889563

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037965 srrm2 serine/arginine repetitive matrix 2 protein_coding Danio_rerio
ENSG00000177679 SRRM3 serine/arginine repetitive matrix 3 protein_coding Homo_sapiens

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