C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006NT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146701-ENSG00000177679 CGP 9606 7:76048051-76287288
GeneTranscriptPositionBiotype
ENSG00000146701 (MDH2)
malate dehydrogenase 2, NAD (mitochondrial) 		ENST00000315758 (MDH2-001) 76048067-76067508 protein_coding
ENST00000424167 (MDH2-007) 76060368-76065173 retained_intron
ENST00000432020 (MDH2-002) 76048161-76067067 protein_coding
ENST00000443006 (MDH2-004) 76048085-76067506 protein_coding
ENST00000461263 (MDH2-003) 76048051-76049047 protein_coding
ENST00000461665 (MDH2-006) 76048136-76058175 retained_intron
ENST00000490105 (MDH2-008) 76048161-76057447 processed_transcript
ENST00000492663 (MDH2-005) 76054504-76057460 retained_intron
ENSG00000213549 (AC005077.8)
 ENST00000449226 (AC005077.8-001) 76113026-76113400 processed_pseudogene
ENSG00000224273 (AC005077.7)
 ENST00000449786 (AC005077.7-001) 76117725-76132187 unprocessed_pseudogene
ENSG00000227038 (AC005077.12)
 ENST00000434037 (AC005077.12-002) 76090431-76108779 processed_transcript
ENST00000436677 (AC005077.12-001) 76099440-76101408 transcribed_unprocessed_pseudogene
ENSG00000228829 (AC005077.5)
 ENST00000437494 (AC005077.5-002) 76174309-76177205 processed_transcript
ENST00000449614 (AC005077.5-001) 76173733-76175573 transcribed_unprocessed_pseudogene
ENSG00000230882 (AC005077.14)
 ENST00000421546 (AC005077.14-001) 76071469-76074963 processed_pseudogene
ENSG00000251798 (RNU6-863P)
RNA, U6 small nuclear 863, pseudogene 		ENST00000515989 (RNU6-863P-201) 76087444-76087547 snRNA
CIL_0006NT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019179-ENSMUSG00000039860 CGP 10090 5:135778480-135874772
GeneTranscriptPositionBiotype
ENSMUSG00000019179 (Mdh2)
malate dehydrogenase 2, NAD (mitochondrial) 		ENSMUST00000019323 (Mdh2-001) 135778480-135790391 protein_coding
ENSMUST00000130795 (Mdh2-003) 135778677-135784614 retained_intron
ENSMUST00000138101 (Mdh2-002) 135778662-135790398 nonsense_mediated_decay
ENSMUST00000143747 (Mdh2-004) 135778722-135783752 retained_intron
ENSMUSG00000039860 (Srrm3)
serine/arginine repetitive matrix 3 		ENSMUST00000013615 (Srrm3-003) 135818106-135873109 nonsense_mediated_decay
ENSMUST00000126232 (Srrm3-005) 135806897-135852219 protein_coding
ENSMUST00000135615 (Srrm3-006) 135854414-135857509 retained_intron
ENSMUST00000144211 (Srrm3-001) 135818106-135874772 protein_coding
ENSMUST00000146038 (Srrm3-004) 135806890-135841953 retained_intron
ENSMUST00000150566 (Srrm3-007) 135866617-135868209 retained_intron
ENSMUSG00000085026 (Srrm3os)
serine/arginine repetitive matrix 3, opposite strand 		ENSMUST00000131896 (Srrm3os-001) 135843057-135844946 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006NT_0001ENSG00000146701ENST00000315758ENST00000424167ENST00000432020ENST00000443006ENST00000461263ENST00000461665ENST00000490105ENST00000492663ENSG00000213549ENST00000449226ENSG00000224273ENST00000449786ENSG00000227038ENST00000434037ENST00000436677ENSG00000228829ENST00000437494ENST00000449614ENSG00000230882ENST00000421546ENSG00000251798ENST00000515989CIL_0006NT_0002ENSMUSG00000019179ENSMUST00000019323ENSMUST00000130795ENSMUST00000138101ENSMUST00000143747ENSMUSG00000039860ENSMUST00000013615ENSMUST00000126232ENSMUST00000135615ENSMUST00000144211ENSMUST00000146038ENSMUST00000150566ENSMUSG00000085026ENSMUST00000131896
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006NT_0001ENSG00000146701ENST00000315758ENST00000424167ENST00000432020ENST00000443006ENST00000461665ENSG00000213549ENST00000449226ENSG00000224273ENST00000449786ENSG00000227038ENST00000434037ENST00000436677ENSG00000228829ENST00000437494ENST00000449614ENSG00000230882ENST00000421546ENSG00000251798ENST00000515989CIL_0006NT_0002ENSMUSG00000019179ENSMUST00000019323ENSMUST00000138101ENSMUSG00000039860ENSMUST00000013615ENSMUST00000126232ENSMUST00000135615ENSMUST00000144211ENSMUST00000146038ENSMUSG00000085026ENSMUST00000131896
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146701 ENST00000315758 N/A 12.733±0.00 4.745±0.00 19.394±4.13 4.750±0.22 12.352±3.06 5.516±0.00 13.838±8.50 9.732±3.80 2.940±0.00 52.294±0.00 18.776±9.99 12.143±0.00 7.471±1.54
ENST00000424167 N/A 29.332±0.00 N/A N/A N/A 28.404±0.00 N/A 50.340±0.00 N/A N/A N/A N/A N/A N/A
ENST00000432020 34.957±0.00 31.985±0.00 N/A 37.710±0.00 30.236±0.00 32.854±0.00 51.542±48.18 23.538±14.60 19.519±0.00 16.935±0.00 41.482±0.00 33.155±26.43 27.580±13.38 28.461±1.44
ENST00000443006 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.286±0.00 N/A 1.379±0.00 N/A N/A
ENST00000461263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461665 N/A N/A N/A N/A N/A N/A N/A N/A 76.800±0.00 N/A 273.314±0.00 7.087±0.00 N/A N/A
ENST00000490105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213549 ENST00000449226 0.075±0.00 0.164±0.00 0.464±0.00 0.204±0.00 1.631±1.59 1.037±0.92 0.748±0.00 N/A 0.847±0.70 0.405±0.20 N/A 1.176±0.93 0.828±0.00 2.565±2.10
ENSG00000224273 ENST00000449786 N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.030±0.00 0.706±0.00 0.173±0.00 N/A 0.472±0.00 N/A 1.029±0.43
ENSG00000227038 ENST00000434037 0.129±0.00 0.265±0.00 0.021±0.00 0.103±0.03 0.177±0.00 0.050±0.00 0.022±0.01 0.200±0.00 0.298±0.26 0.183±0.03 0.025±0.01 0.173±0.04 N/A 0.400±0.20
ENST00000436677 N/A N/A N/A N/A N/A 2.613±0.00 N/A N/A 0.812±0.00 N/A N/A 0.200±0.06 N/A 0.520±0.00
ENSG00000228829 ENST00000437494 0.215±0.00 0.078±0.00 N/A 0.265±0.00 0.085±0.00 N/A N/A 0.083±0.00 N/A 0.159±0.00 N/A 1.374±0.00 N/A 1.001±0.00
ENST00000449614 N/A N/A N/A N/A N/A N/A N/A N/A 0.200±0.00 N/A N/A N/A N/A 0.395±0.00
ENSG00000230882 ENST00000421546 0.012±0.00 0.061±0.00 N/A 0.106±0.00 0.193±0.00 0.210±0.00 0.031±0.02 0.014±0.00 2.389±0.00 0.024±0.00 N/A 0.744±0.44 0.051±0.00 2.255±0.98
ENSG00000251798 ENST00000515989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.679±0.00 N/A 1.922±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019179 ENSMUST00000019323 106.322±74.84 360.502±47.09 110.411±5.37 94.867±46.22 239.919±116.82 164.793±109.56 336.392±34.14 121.616±32.55 92.467±46.07 102.965±45.08 331.630±130.07 194.732±99.72 127.537±71.14 27.333±12.33
ENSMUST00000130795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138101 N/A N/A N/A 99.158±0.00 42.704±0.00 N/A N/A 54.142±0.00 N/A N/A 85.092±16.96 123.969±22.52 193.761±111.46 7.743±0.00
ENSMUST00000143747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039860 ENSMUST00000013615 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A 0.032±0.00 0.093±0.00 N/A
ENSMUST00000126232 N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A
ENSMUST00000135615 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144211 0.024±0.01 N/A 0.012±0.01 13.422±0.55 0.027±0.01 N/A 0.018±0.00 0.015±0.00 0.009±0.00 0.027±0.01 0.034±0.00 0.036±0.02 0.145±0.00 0.053±0.01
ENSMUST00000146038 0.215±0.11 1.555±0.44 0.012±0.00 N/A 0.673±0.51 0.788±0.21 0.106±0.02 0.246±0.12 0.160±0.12 0.523±0.13 N/A 0.462±0.27 0.025±0.01 0.475±0.00
ENSMUST00000150566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085026 ENSMUST00000131896 N/A N/A 0.020±0.00 0.453±0.00 0.033±0.00 0.109±0.00 N/A N/A N/A N/A 0.052±0.00 N/A 0.027±0.02 1.037±0.47

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