C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006NG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177679-ENSG00000106211 CGP 9606 7:76201900-76304295
GeneTranscriptPositionBiotype
ENSG00000106211 (HSPB1)
heat shock 27kDa protein 1 		ENST00000248553 (HSPB1-001) 76302544-76304295 protein_coding
ENST00000429938 (HSPB1-003) 76303577-76304295 protein_coding
ENST00000447574 (HSPB1-002) 76302688-76304260 nonsense_mediated_decay
CIL_0006NG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039860-ENSMUSG00000004951 CGP 10090 5:135806890-135889563
GeneTranscriptPositionBiotype
ENSMUSG00000004951 (Hspb1)
heat shock protein 1 		ENSMUST00000005077 (Hspb1-001) 135887919-135889563 protein_coding
ENSMUST00000111155 (Hspb1-002) 135888018-135889561 protein_coding
ENSMUSG00000039860 (Srrm3)
serine/arginine repetitive matrix 3 		ENSMUST00000013615 (Srrm3-003) 135818106-135873109 nonsense_mediated_decay
ENSMUST00000126232 (Srrm3-005) 135806897-135852219 protein_coding
ENSMUST00000135615 (Srrm3-006) 135854414-135857509 retained_intron
ENSMUST00000144211 (Srrm3-001) 135818106-135874772 protein_coding
ENSMUST00000146038 (Srrm3-004) 135806890-135841953 retained_intron
ENSMUST00000150566 (Srrm3-007) 135866617-135868209 retained_intron
ENSMUSG00000085026 (Srrm3os)
serine/arginine repetitive matrix 3, opposite strand 		ENSMUST00000131896 (Srrm3os-001) 135843057-135844946 antisense
ENSMUSG00000095502 (Gm22450)
predicted gene, 22450 		ENSMUST00000179641 (Gm22450-201) 135875657-135875763 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006NG_0001ENSG00000106211ENST00000248553ENST00000429938ENST00000447574CIL_0006NG_0002ENSMUSG00000004951ENSMUST00000005077ENSMUST00000111155ENSMUSG00000039860ENSMUST00000013615ENSMUST00000126232ENSMUST00000135615ENSMUST00000144211ENSMUST00000146038ENSMUST00000150566ENSMUSG00000085026ENSMUST00000131896ENSMUSG00000095502ENSMUST00000179641
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006NG_0001ENSG00000106211ENST00000248553ENST00000429938ENST00000447574CIL_0006NG_0002ENSMUSG00000004951ENSMUST00000005077ENSMUST00000111155ENSMUSG00000039860ENSMUST00000013615ENSMUST00000126232ENSMUST00000135615ENSMUST00000144211ENSMUST00000146038ENSMUSG00000085026ENSMUST00000131896ENSMUSG00000095502ENSMUST00000179641
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106211 ENST00000248553 453.265±0.00 572.994±0.00 13.575±0.00 36.855±31.98 207.534±187.70 848.010±832.44 189.680±175.95 305.291±292.47 54.804±14.85 327.424±317.31 743.333±587.85 536.377±469.32 695.296±296.76 281.377±245.59
ENST00000429938 N/A N/A N/A 1.658±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447574 N/A N/A 2.458±0.00 0.426±0.00 3.286±0.00 1.078±0.00 1.832±0.00 N/A 2.490±0.00 7.681±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004951 ENSMUST00000005077 86.005±9.84 78.305±35.92 375.982±29.35 5.660±2.52 69.635±27.25 118.314±3.11 168.938±42.07 23.128±1.74 2.959±1.73 123.031±24.11 95.594±12.38 74.679±10.21 499.418±167.38 16.741±6.58
ENSMUST00000111155 N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.776±1.33 N/A N/A N/A N/A
ENSMUSG00000039860 ENSMUST00000013615 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A 0.032±0.00 0.093±0.00 N/A
ENSMUST00000126232 N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A
ENSMUST00000135615 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144211 0.024±0.01 N/A 0.012±0.01 13.422±0.55 0.027±0.01 N/A 0.018±0.00 0.015±0.00 0.009±0.00 0.027±0.01 0.034±0.00 0.036±0.02 0.145±0.00 0.053±0.01
ENSMUST00000146038 0.215±0.11 1.555±0.44 0.012±0.00 N/A 0.673±0.51 0.788±0.21 0.106±0.02 0.246±0.12 0.160±0.12 0.523±0.13 N/A 0.462±0.27 0.025±0.01 0.475±0.00
ENSMUST00000150566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085026 ENSMUST00000131896 N/A N/A 0.020±0.00 0.453±0.00 0.033±0.00 0.109±0.00 N/A N/A N/A N/A 0.052±0.00 N/A 0.027±0.02 1.037±0.47
ENSMUSG00000095502 ENSMUST00000179641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.254±0.00

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