C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: serine/arginine repetitive matrix 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013615 Srrm3-003 ENSMUSG00000039860 10090 + 5:135818106-135873109 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyOvaryPlacentaENSMUST00000013615
Transcript ID Adipose Kidney Ovary Placenta
ENSMUST00000013615 0.033±0.00 0.025±0.00 0.032±0.00 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NT CIL_0006NT_0002 CGP 5:135778480-135874772
CIL_0006NG CIL_0006NG_0002 CGP 5:135806890-135889563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000464752 SRRM3-002 protein_coding Homo_sapiens 0 315
ENST00000479294 SRRM3-004 retained_intron Homo_sapiens 0 525
ENST00000611745 SRRM3-001 protein_coding Homo_sapiens 0 1814
ENST00000612155 SRRM3-003 retained_intron Homo_sapiens 0 357

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