C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: erythroid differentiation regulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128901 Edrf1-003 ENSMUSG00000039990 10090 + 7:133637693-133672179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128901 1.434±0.60 1.671±0.64 3.316±0.79 4.268±0.59 1.854±0.53 1.376±0.19 1.212±0.18 1.592±0.42 2.338±0.97 1.935±0.28 1.473±0.22 2.757±1.30 4.401±1.06 2.800±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JW CIL_0002JW_0003 CGP 7:133587024-133672971
CIL_0001V7 CIL_0001V7_0002 CGP 7:133637543-133680061

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337623 EDRF1-001 protein_coding Homo_sapiens 0 4253
ENST00000356792 EDRF1-007 protein_coding Homo_sapiens 0 3286
ENST00000368813 EDRF1-002 protein_coding Homo_sapiens 0 808
ENST00000368815 EDRF1-008 nonsense_mediated_decay Homo_sapiens 0 3253
ENST00000419769 EDRF1-006 nonsense_mediated_decay Homo_sapiens 0 1869
ENST00000469725 EDRF1-005 retained_intron Homo_sapiens 0 414
ENST00000481600 EDRF1-003 nonsense_mediated_decay Homo_sapiens 0 3212
ENST00000525091 EDRF1-009 retained_intron Homo_sapiens 0 3733
ENST00000530795 EDRF1-010 nonsense_mediated_decay Homo_sapiens 0 614

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