C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: erythroid differentiation regulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051169 Edrf1-001 ENSMUSG00000039990 10090 + 7:133637543-133672971 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051169 1.006±0.31 0.730±0.01 1.617±0.22 2.211±0.18 1.137±0.05 0.998±0.04 0.402±0.10 1.174±0.21 1.121±0.59 0.970±0.00 0.378±0.12 1.205±0.64 1.798±0.26 1.751±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JW CIL_0002JW_0003 CGP 7:133587024-133672971
CIL_0001V7 CIL_0001V7_0002 CGP 7:133637543-133680061

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337623 EDRF1-001 protein_coding Homo_sapiens 0 3286
ENST00000356792 EDRF1-007 protein_coding Homo_sapiens 0 4381
ENST00000368813 EDRF1-002 protein_coding Homo_sapiens 0 808
ENST00000368815 EDRF1-008 nonsense_mediated_decay Homo_sapiens 0 4348
ENST00000419769 EDRF1-006 nonsense_mediated_decay Homo_sapiens 0 2964
ENST00000469725 EDRF1-005 retained_intron Homo_sapiens 0 414
ENST00000481600 EDRF1-003 nonsense_mediated_decay Homo_sapiens 0 4307
ENST00000525091 EDRF1-009 retained_intron Homo_sapiens 0 2765
ENST00000530795 EDRF1-010 nonsense_mediated_decay Homo_sapiens 0 614

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