C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein kinase C and casein kinase substrate in neurons 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040276 Pacsin1 10090 + 17:27655509-27711106 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045896 Pacsin1-001 27655588-27711106 protein_coding
  ENSMUST00000097360 Pacsin1-002 27685197-27708659 protein_coding
  ENSMUST00000114872 Pacsin1-004 27655643-27708677 protein_coding
  ENSMUST00000114873 Pacsin1-003 27655509-27708659 protein_coding
  ENSMUST00000155259 Pacsin1-005 27685227-27686085 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045896ENSMUST00000097360ENSMUST00000114872ENSMUST00000114873
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045896 0.071±0.04 1.012±0.19 0.156±0.02 19.044±21.20 1.805±1.09 0.110±0.03 0.184±0.12 0.040±0.01 0.191±0.07 0.056±0.07 0.601±0.24 0.201±0.13 N/A
ENSMUST00000097360 N/A N/A N/A 2.187±0.04 N/A N/A N/A 0.030±0.01 0.239±0.00 N/A 1.883±0.69 N/A N/A
ENSMUST00000114872 0.073±0.00 N/A 0.115±0.01 408.431±0.00 N/A 0.221±0.02 0.136±0.01 0.042±0.01 0.169±0.00 0.037±0.02 1.551±0.81 1.036±1.70 16.511±27.80
ENSMUST00000114873 N/A N/A 0.079±0.00 N/A 0.768±0.29 N/A 0.232±0.08 0.022±0.00 0.174±0.00 0.089±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LP CIL_0004LP_0003 CGP 17:27630422-27711106
CIL_0004LR CIL_0004LR_0003 CGP 17:27655509-27728951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005737 IDA cytoplasm
GO:0007015 IEA actin filament organization
GO:0007165 TAS signal transduction
GO:0008092 IDA cytoskeletal protein binding
GO:0030054 IEA cell junction
GO:0030137 IDA COPI-coated vesicle
GO:0032587 IDA ruffle membrane
GO:0043679 ISS axon terminus
GO:0045202 IEA synapse
GO:0045806 IDA negative regulation of endocytosis
GO:0048488 IMP synaptic vesicle endocytosis
GO:0048812 ISS neuron projection morphogenesis
GO:0072657 IMP protein localization to membrane
GO:0097320 IMP membrane tubulation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032865 pacsin1a protein kinase C and casein kinase substrate in neurons 1a protein_coding Danio_rerio
ENSDARG00000042128 pacsin1b protein kinase C and casein kinase substrate in neurons 1b protein_coding Danio_rerio
ENSG00000124507 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 protein_coding Homo_sapiens

Loading