C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C and casein kinase substrate in neurons 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114873 Pacsin1-003 ENSMUSG00000040276 10090 + 17:27655509-27708659 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverLungMuscleENSMUST00000114873
Transcript ID Bladder Breast Kidney Liver Lung Muscle
ENSMUST00000114873 0.079±0.00 0.768±0.29 0.232±0.08 0.022±0.00 0.174±0.00 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LP CIL_0004LP_0003 CGP 17:27630422-27711106
CIL_0004LR CIL_0004LR_0003 CGP 17:27655509-27728951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005737 IDA cytoplasm
GO:0007015 IEA actin filament organization
GO:0007165 TAS signal transduction
GO:0008092 IDA cytoskeletal protein binding
GO:0030054 IEA cell junction
GO:0030137 IDA COPI-coated vesicle
GO:0032587 IDA ruffle membrane
GO:0043679 ISS axon terminus
GO:0045202 IEA synapse
GO:0045806 IDA negative regulation of endocytosis
GO:0048488 IMP synaptic vesicle endocytosis
GO:0048812 ISS neuron projection morphogenesis
GO:0072657 IMP protein localization to membrane
GO:0097320 IMP membrane tubulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244458 PACSIN1-001 protein_coding Homo_sapiens 0 1742
ENST00000263246 PACSIN2-001 protein_coding Homo_sapiens 0 481
ENST00000337959 PACSIN2-201 protein_coding Homo_sapiens 0 483
ENST00000374043 PACSIN1-003 protein_coding Homo_sapiens 0 1742
ENST00000402229 PACSIN2-004 protein_coding Homo_sapiens 0 481
ENST00000403744 PACSIN2-005 protein_coding Homo_sapiens 0 481
ENST00000407585 PACSIN2-003 protein_coding Homo_sapiens 0 483
ENST00000486120 PACSIN1-005 processed_transcript Homo_sapiens 0 765
ENST00000487760 PACSIN1-004 processed_transcript Homo_sapiens 0 279
ENST00000493633 PACSIN1-002 processed_transcript Homo_sapiens 0 279
ENST00000538621 PACSIN1-201 protein_coding Homo_sapiens 0 1742
ENST00000620693 PACSIN1-202 protein_coding Homo_sapiens 0 1742

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