C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC element 4 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040331 Nsmce4a 10090 - 7:130532523-130573118 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000159694 Nsmce4a-006 130533770-130573118 protein_coding
  ENSMUST00000160289 Nsmce4a-001 130532523-130547381 protein_coding
  ENSMUST00000161076 Nsmce4a-003 130536983-130545954 nonsense_mediated_decay
  ENSMUST00000161414 Nsmce4a-002 130539708-130542791 retained_intron
  ENSMUST00000161470 Nsmce4a-004 130535549-130539507 retained_intron
  ENSMUST00000162510 Nsmce4a-005 130532533-130535973 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159694ENSMUST00000160289ENSMUST00000161076
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159694 N/A N/A N/A N/A 6.534±0.00 N/A N/A N/A N/A N/A N/A 15.983±0.00 N/A N/A
ENSMUST00000160289 21.569±7.56 35.919±18.42 26.634±1.12 19.159±6.78 19.204±9.44 48.396±6.72 12.025±0.80 26.312±3.53 26.537±16.56 22.366±2.75 15.421±1.42 63.221±19.86 37.131±6.30 7.080±1.90
ENSMUST00000161076 N/A N/A N/A 16.174±0.00 N/A N/A N/A N/A N/A N/A N/A 39.872±0.00 43.166±5.10 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_00095T CIL_00095T_0002 VISTA 7:130125765-130727321
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0001BD CIL_0001BD_0002 CGP 7:130391526-130573118
CIL_00047F CIL_00047F_0003 CGP 7:130532523-130764784

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0030915 IEA Smc5-Smc6 complex
GO:2001022 IEA positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024311 nsmce4a non-SMC element 4 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000107672 NSMCE4A non-SMC element 4 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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