C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 4 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159694 Nsmce4a-006 ENSMUSG00000040331 10090 - 7:130533770-130573118 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryENSMUST00000159694
Transcript ID Breast Ovary
ENSMUST00000159694 6.534±0.00 15.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_00095T CIL_00095T_0002 VISTA 7:130125765-130727321
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0001BD CIL_0001BD_0002 CGP 7:130391526-130573118
CIL_00047F CIL_00047F_0003 CGP 7:130532523-130764784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0030915 IEA Smc5-Smc6 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369017 NSMCE4A-007 protein_coding Homo_sapiens 0 553
ENST00000369023 NSMCE4A-005 protein_coding Homo_sapiens 0 867
ENST00000464321 NSMCE4A-010 processed_transcript Homo_sapiens 0 427
ENST00000468209 NSMCE4A-012 processed_transcript Homo_sapiens 0 867
ENST00000483541 NSMCE4A-001 retained_intron Homo_sapiens 0 351
ENST00000489266 NSMCE4A-006 processed_transcript Homo_sapiens 0 553
ENST00000603126 RP11-411B10.8-001 processed_pseudogene Homo_sapiens 0 584

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