C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 4 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160289 Nsmce4a-001 ENSMUSG00000040331 10090 - 7:130532523-130547381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160289 21.569±7.56 35.919±18.42 26.634±1.12 19.159±6.78 19.204±9.44 48.396±6.72 12.025±0.80 26.312±3.53 26.537±16.56 22.366±2.75 15.421±1.42 63.221±19.86 37.131±6.30 7.080±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_00095T CIL_00095T_0002 VISTA 7:130125765-130727321
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0001BD CIL_0001BD_0002 CGP 7:130391526-130573118
CIL_00047F CIL_00047F_0003 CGP 7:130532523-130764784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0030915 IEA Smc5-Smc6 complex
GO:2001022 IEA positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369017 NSMCE4A-007 protein_coding Homo_sapiens 0 1003
ENST00000369023 NSMCE4A-005 protein_coding Homo_sapiens 0 1552
ENST00000459911 NSMCE4A-004 processed_transcript Homo_sapiens 0 289
ENST00000464321 NSMCE4A-010 processed_transcript Homo_sapiens 0 536
ENST00000465189 NSMCE4A-009 processed_transcript Homo_sapiens 0 254
ENST00000468209 NSMCE4A-012 processed_transcript Homo_sapiens 0 1040
ENST00000477289 NSMCE4A-002 retained_intron Homo_sapiens 0 196
ENST00000483541 NSMCE4A-001 retained_intron Homo_sapiens 0 351
ENST00000489266 NSMCE4A-006 processed_transcript Homo_sapiens 0 662
ENST00000603126 RP11-411B10.8-001 processed_pseudogene Homo_sapiens 0 669

Loading