C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001BD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107669-ENSG00000107672 CGP 9606 10:121740421-121975217
GeneTranscriptPositionBiotype
ENSG00000107669 (ATE1)
arginyltransferase 1 		ENST00000224652 (ATE1-201) 121740421-121928063 protein_coding
ENST00000369040 (ATE1-202) 121740421-121928063 protein_coding
ENST00000369043 (ATE1-001) 121740424-121928036 protein_coding
ENST00000423243 (ATE1-002) 121743195-121927938 protein_coding
ENST00000455628 (ATE1-006) 121902517-121928462 protein_coding
ENST00000481784 (ATE1-003) 121841119-121902538 processed_transcript
ENST00000485281 (ATE1-005) 121782494-121790226 processed_transcript
ENST00000540606 (ATE1-203) 121740421-121928801 protein_coding
ENST00000543447 (ATE1-204) 121740421-121928063 protein_coding
ENSG00000201884 (Y_RNA)
Y RNA 		ENST00000365014 (Y_RNA.1-507) 121846600-121846700 misc_RNA
ENSG00000226864 (ATE1-AS1)
ATE1 antisense RNA 1 (head to head) 		ENST00000437593 (ATE1-AS1-001) 121928312-121951965 antisense
ENSG00000273767 (ZNRD1-AS1_2)
ZNRD1 antisense RNA 1 conserved region 2 		ENST00000622597 (ZNRD1-AS1_2.1-202) 121949412-121949487 misc_RNA
ENSG00000273891 (RP11-500G22.5)
 ENST00000620490 (RP11-500G22.5-001) 121965764-121967700 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0001BD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030850-ENSMUSG00000040331 CGP 10090 7:130391526-130573118
GeneTranscriptPositionBiotype
ENSMUSG00000030850 (Ate1)
arginyltransferase 1 		ENSMUST00000033139 (Ate1-201) 130391526-130519539 protein_coding
ENSMUST00000035458 (Ate1-202) 130391526-130519530 protein_coding
ENSMUST00000094017 (Ate1-203) 130394558-130519961 protein_coding
ENSMUST00000178534 (Ate1-204) 130394558-130519961 protein_coding
ENSMUSG00000040331 (Nsmce4a)
non-SMC element 4 homolog A (S. cerevisiae) 		ENSMUST00000159694 (Nsmce4a-006) 130533770-130573118 protein_coding
ENSMUST00000160289 (Nsmce4a-001) 130532523-130547381 protein_coding
ENSMUST00000161076 (Nsmce4a-003) 130536983-130545954 nonsense_mediated_decay
ENSMUST00000161414 (Nsmce4a-002) 130539708-130542791 retained_intron
ENSMUST00000161470 (Nsmce4a-004) 130535549-130539507 retained_intron
ENSMUST00000162510 (Nsmce4a-005) 130532533-130535973 retained_intron
ENSMUSG00000099422 (RP23-204E23.2)
predicted gene 4275 		ENSMUST00000190198 (RP23-204E23.2-001) 130525927-130529198 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001BD_0001ENSG00000107669ENST00000224652ENST00000369040ENST00000369043ENST00000423243ENST00000455628ENST00000481784ENST00000485281ENST00000540606ENST00000543447ENSG00000201884ENST00000365014ENSG00000226864ENST00000437593ENSG00000273767ENST00000622597ENSG00000273891ENST00000620490CIL_0001BD_0002ENSMUSG00000030850ENSMUST00000033139ENSMUST00000035458ENSMUST00000094017ENSMUST00000178534ENSMUSG00000040331ENSMUST00000159694ENSMUST00000160289ENSMUST00000161076ENSMUST00000161414ENSMUST00000161470ENSMUST00000162510ENSMUSG00000099422ENSMUST00000190198
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001BD_0001ENSG00000107669ENST00000224652ENST00000369040ENST00000369043ENST00000423243ENST00000455628ENST00000543447ENSG00000201884ENST00000365014ENSG00000226864ENST00000437593ENSG00000273767ENST00000622597ENSG00000273891ENST00000620490CIL_0001BD_0002ENSMUSG00000030850ENSMUST00000033139ENSMUST00000035458ENSMUST00000094017ENSMUSG00000040331ENSMUST00000159694ENSMUST00000160289ENSMUST00000161076ENSMUSG00000099422ENSMUST00000190198
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107669 ENST00000224652 2.228±0.00 0.442±0.00 N/A N/A N/A 1.048±0.00 N/A N/A 0.747±0.00 1.283±0.00 3.086±0.00 1.280±0.00 1.002±0.00 2.962±0.00
ENST00000369040 N/A 0.563±0.00 N/A 1.193±0.00 1.166±0.00 1.062±0.00 N/A N/A 1.350±0.00 1.487±0.00 2.489±0.65 1.460±0.00 0.666±0.02 2.271±0.00
ENST00000369043 2.249±0.00 1.467±0.00 1.506±0.00 4.075±0.62 1.660±0.16 3.621±0.48 4.461±1.02 1.725±0.25 2.891±1.97 1.479±0.00 4.897±0.00 3.065±1.71 1.115±0.43 1.255±0.04
ENST00000423243 N/A N/A 1.421±0.00 9.612±0.00 N/A N/A N/A 0.942±0.00 3.808±0.00 N/A N/A 5.687±0.00 N/A 2.648±0.00
ENST00000455628 N/A N/A N/A N/A N/A N/A N/A 3.295±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543447 N/A 0.603±0.00 N/A N/A 0.643±0.00 N/A N/A 2.409±0.00 N/A 0.899±0.00 N/A 1.309±0.28 0.612±0.06 2.459±0.30
ENSG00000201884 ENST00000365014 N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226864 ENST00000437593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.621±0.00
ENSG00000273767 ENST00000622597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.477±2.11
ENSG00000273891 ENST00000620490 N/A N/A N/A 0.636±0.00 0.713±0.00 N/A 0.185±0.00 N/A N/A N/A 0.248±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030850 ENSMUST00000033139 3.943±0.96 5.319±1.85 3.994±0.88 7.018±2.98 2.661±0.62 2.371±0.52 2.509±0.59 3.428±0.45 2.053±0.85 4.687±1.17 2.794±1.22 4.299±1.03 6.467±2.62 2.752±0.99
ENSMUST00000035458 1.589±0.39 1.621±0.57 3.595±0.72 2.825±1.09 1.709±0.67 1.119±0.43 1.875±0.52 1.944±0.63 1.613±0.77 2.750±1.07 3.126±1.08 2.322±1.48 7.495±2.77 1.460±0.00
ENSMUST00000094017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.788±3.27 4.573±1.23
ENSMUST00000178534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040331 ENSMUST00000159694 N/A N/A N/A N/A 6.534±0.00 N/A N/A N/A N/A N/A N/A 15.983±0.00 N/A N/A
ENSMUST00000160289 21.569±7.56 35.919±18.42 26.634±1.12 19.159±6.78 19.204±9.44 48.396±6.72 12.025±0.80 26.312±3.53 26.537±16.56 22.366±2.75 15.421±1.42 63.221±19.86 37.131±6.30 7.080±1.90
ENSMUST00000161076 N/A N/A N/A 16.174±0.00 N/A N/A N/A N/A N/A N/A N/A 39.872±0.00 43.166±5.10 N/A
ENSMUST00000161414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099422 ENSMUST00000190198 0.263±0.11 0.210±0.01 0.082±0.00 N/A 0.269±0.25 N/A 0.063±0.00 0.090±0.03 0.064±0.04 N/A 0.061±0.00 0.326±0.16 0.277±0.14 14.870±8.87

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