C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC element 4 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107672 NSMCE4A 9606 - 10:121957088-121975217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369017 NSMCE4A-007 121961757-121975194 protein_coding
  ENST00000369023 NSMCE4A-005 121957088-121975217 protein_coding
  ENST00000459911 NSMCE4A-004 121957091-121959785 processed_transcript
  ENST00000464321 NSMCE4A-010 121965343-121974807 processed_transcript
  ENST00000465189 NSMCE4A-009 121967693-121975122 processed_transcript
  ENST00000468209 NSMCE4A-012 121959365-121974285 processed_transcript
  ENST00000472431 NSMCE4A-013 121967646-121974754 processed_transcript
  ENST00000477289 NSMCE4A-002 121957091-121959797 retained_intron
  ENST00000481320 NSMCE4A-008 121967378-121974788 retained_intron
  ENST00000483541 NSMCE4A-001 121959918-121965304 retained_intron
  ENST00000489266 NSMCE4A-006 121957141-121975216 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369023ENST00000465189ENST00000468209ENST00000477289ENST00000489266
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369023 10.153±0.00 23.007±0.00 0.944±0.00 2.392±0.96 13.132±11.30 7.435±5.21 3.685±2.86 8.119±1.89 4.580±2.97 4.346±1.54 5.290±4.07 15.690±7.72 9.145±1.65 5.464±2.19
ENST00000465189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.818±0.00 N/A N/A N/A
ENST00000468209 N/A N/A N/A 1.115±0.10 3.208±0.00 3.009±0.00 N/A N/A 1.685±0.00 1.641±0.00 N/A 6.048±4.10 N/A 2.308±0.00
ENST00000477289 N/A N/A 2.527±0.00 N/A 4.266±0.00 3.956±0.00 N/A N/A N/A 3.830±0.00 0.984±0.00 8.140±2.76 N/A N/A
ENST00000489266 N/A N/A N/A 0.489±0.00 N/A 1.718±0.00 1.014±0.00 1.991±0.00 1.553±0.37 1.101±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095T CIL_00095T_0001 VISTA 10:121499915-122101503
CIL_0001BD CIL_0001BD_0001 CGP 10:121740421-121975217
CIL_00047F CIL_00047F_0002 CGP 10:121957088-122254545

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0030915 IDA Smc5-Smc6 complex
GO:2001022 IMP positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024311 nsmce4a non-SMC element 4 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000040331 Nsmce4a non-SMC element 4 homolog A (S. cerevisiae) protein_coding Mus_musculus

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