C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peroxisomal biogenesis factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040374 Pex2 10090 - 3:5560188-5576239 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059021 Pex2-201 5560188-5576239 protein_coding
  ENSMUST00000071280 Pex2-202 5560188-5576150 protein_coding
  ENSMUST00000164828 Pex2-203 5560188-5576150 protein_coding
  ENSMUST00000165309 Pex2-204 5560188-5576150 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059021ENSMUST00000071280ENSMUST00000164828ENSMUST00000165309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059021 4.896±1.21 17.507±1.97 3.695±0.35 4.299±1.40 6.641±3.06 8.899±3.59 5.142±0.46 6.930±3.22 5.513±2.09 8.014±0.98 3.193±0.00 7.415±2.77 3.844±2.87 1.395±0.44
ENSMUST00000071280 N/A N/A N/A 0.774±0.00 N/A N/A 0.967±0.00 N/A N/A N/A 1.553±0.31 1.332±0.00 1.173±0.25 0.207±0.00
ENSMUST00000164828 2.044±0.17 N/A 4.124±1.15 3.066±0.10 2.261±1.53 1.919±0.50 1.499±0.00 3.599±1.09 2.650±1.02 1.853±0.50 3.863±0.00 3.873±2.56 4.110±0.88 1.042±0.19
ENSMUST00000165309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.938±0.20 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0004 UCNEbase 3:3760514-6887688
CIL_0008IW CIL_0008IW_0002 VISTA 3:5029674-5630756
CIL_0008U7 CIL_0008U7_0002 VISTA 3:5087050-5689713
CIL_0002OE CIL_0002OE_0002 CGP 3:5218526-5576239
CIL_0008QU CIL_0008QU_0002 VISTA 3:5454492-6056119

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000038 IEA very long-chain fatty acid metabolic process
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IMP neuron migration
GO:0005777 IEA peroxisome
GO:0005778 IEA peroxisomal membrane
GO:0005779 IEA integral component of peroxisomal membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0006699 IMP bile acid biosynthetic process
GO:0007031 IEA peroxisome organization
GO:0007399 IMP nervous system development
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016558 IEA protein import into peroxisome matrix
GO:0016593 IEA Cdc73/Paf1 complex
GO:0031648 IEA protein destabilization
GO:0042632 IMP cholesterol homeostasis
GO:0045540 IMP regulation of cholesterol biosynthetic process
GO:0048147 IEA negative regulation of fibroblast proliferation
GO:0050680 IEA negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062421 pex2 peroxisomal biogenesis factor 2 protein_coding Danio_rerio
ENSG00000164751 PEX2 peroxisomal biogenesis factor 2 protein_coding Homo_sapiens

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