C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisomal biogenesis factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164828 Pex2-203 ENSMUSG00000040374 10090 - 3:5560188-5576150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164828
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164828 2.044±0.17 4.124±1.15 3.066±0.10 2.261±1.53 1.919±0.50 1.499±0.00 3.599±1.09 2.650±1.02 1.853±0.50 3.863±0.00 3.873±2.56 4.110±0.88 1.042±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0004 UCNEbase 3:3760514-6887688
CIL_0008IW CIL_0008IW_0002 VISTA 3:5029674-5630756
CIL_0008U7 CIL_0008U7_0002 VISTA 3:5087050-5689713
CIL_0002OE CIL_0002OE_0002 CGP 3:5218526-5576239
CIL_0008QU CIL_0008QU_0002 VISTA 3:5454492-6056119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000038 IEA very long-chain fatty acid metabolic process
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IMP neuron migration
GO:0005777 IEA peroxisome
GO:0005778 IEA peroxisomal membrane
GO:0005779 IEA integral component of peroxisomal membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0006699 IMP bile acid biosynthetic process
GO:0007031 IEA peroxisome organization
GO:0007399 IMP nervous system development
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016558 IEA protein import into peroxisome matrix
GO:0016593 IEA Cdc73/Paf1 complex
GO:0031648 IEA protein destabilization
GO:0042632 IMP cholesterol homeostasis
GO:0045540 IMP regulation of cholesterol biosynthetic process
GO:0048147 IEA negative regulation of fibroblast proliferation
GO:0050680 IEA negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357039 PEX2-001 protein_coding Homo_sapiens 0 1151
ENST00000518986 PEX2-006 protein_coding Homo_sapiens 0 595
ENST00000520103 PEX2-003 protein_coding Homo_sapiens 0 1110
ENST00000522527 PEX2-002 protein_coding Homo_sapiens 0 1110

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