C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164787 Cdh18-001 ENSMUSG00000040420 10090 + 15:23036463-23474418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000164787
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000164787 0.157±0.06 0.387±0.13 2.104±1.16 0.053±0.03 0.058±0.03 0.022±0.01 0.059±0.05 0.021±0.00 0.066±0.01 0.013±0.01 0.687±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XA CIL_0003XA_0003 CGP 15:21111452-23474418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274170 CDH18-201 protein_coding Homo_sapiens 0 3105
ENST00000382275 CDH18-001 protein_coding Homo_sapiens 0 3105
ENST00000502796 CDH18-003 protein_coding Homo_sapiens 0 2104
ENST00000506372 CDH18-004 protein_coding Homo_sapiens 0 2104
ENST00000507958 CDH18-005 protein_coding Homo_sapiens 0 3105
ENST00000508350 CDH18-010 processed_transcript Homo_sapiens 0 486
ENST00000510297 CDH18-011 processed_transcript Homo_sapiens 0 593
ENST00000511273 CDH18-002 protein_coding Homo_sapiens 0 2224
ENST00000515257 CDH18-006 protein_coding Homo_sapiens 0 1443

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