C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 25 (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039601 Snrnp25-001 ENSMUSG00000040767 10090 + 11:32205415-32208984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039601 6.353±2.21 0.878±0.42 10.798±0.16 17.874±5.92 4.191±1.37 9.758±1.77 4.444±1.08 5.842±0.58 22.922±27.09 5.084±1.19 5.548±0.77 7.167±2.48 20.339±7.91 16.031±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0045171 IEA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293861 SNRNP25-001 protein_coding Homo_sapiens 0 514
ENST00000383018 SNRNP25-201 protein_coding Homo_sapiens 0 514
ENST00000397876 SNRNP25-004 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000417493 SNRNP25-006 protein_coding Homo_sapiens 0 327
ENST00000466183 SNRNP25-002 retained_intron Homo_sapiens 0 394
ENST00000481947 SNRNP25-005 retained_intron Homo_sapiens 0 219
ENST00000493672 SNRNP25-007 processed_transcript Homo_sapiens 0 268

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