C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 25 (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155736 Snrnp25-004 ENSMUSG00000040767 10090 + 11:32205458-32207651 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000155736
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000155736 4.506±0.55 2.553±0.36 4.578±1.39 14.250±2.88 2.852±0.60 1.037±0.33 5.860±0.00 7.110±3.40 10.474±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293861 SNRNP25-001 protein_coding Homo_sapiens 0 268
ENST00000383018 SNRNP25-201 protein_coding Homo_sapiens 0 268
ENST00000397876 SNRNP25-004 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000417493 SNRNP25-006 protein_coding Homo_sapiens 0 307
ENST00000466183 SNRNP25-002 retained_intron Homo_sapiens 9e-34 148
ENST00000481947 SNRNP25-005 retained_intron Homo_sapiens 1e-23 115
ENST00000493672 SNRNP25-007 processed_transcript Homo_sapiens 0 342

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