C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 25 (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149043 Snrnp25-003 ENSMUSG00000040767 10090 + 11:32205446-32208408 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000149043
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000149043 2.626±0.68 0.955±0.35 2.063±0.01 3.625±0.00 1.499±0.07 3.255±0.33 1.107±0.46 2.412±0.59 5.535±2.90 6.564±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293861 SNRNP25-001 protein_coding Homo_sapiens 0 322
ENST00000383018 SNRNP25-201 protein_coding Homo_sapiens 0 322
ENST00000397876 SNRNP25-004 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000417493 SNRNP25-006 protein_coding Homo_sapiens 0 422
ENST00000466183 SNRNP25-002 retained_intron Homo_sapiens 0 207
ENST00000481947 SNRNP25-005 retained_intron Homo_sapiens 6e-31 139
ENST00000493672 SNRNP25-007 processed_transcript Homo_sapiens 0 307

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