C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho guanine nucleotide exchange factor (GEF) 10-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040964 Arhgef10l 10090 - 4:140514485-140666012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039204 Arhgef10l-007 140514485-140648750 protein_coding
  ENSMUST00000069623 Arhgef10l-001 140514485-140666012 protein_coding
  ENSMUST00000097820 Arhgef10l-002 140514485-140648756 protein_coding
  ENSMUST00000105797 Arhgef10l-005 140514485-140581818 protein_coding
  ENSMUST00000105798 Arhgef10l-004 140514485-140584343 protein_coding
  ENSMUST00000105799 Arhgef10l-003 140514485-140648750 protein_coding
  ENSMUST00000125045 Arhgef10l-011 140580865-140592040 retained_intron
  ENSMUST00000138493 Arhgef10l-006 140514485-140577094 nonsense_mediated_decay
  ENSMUST00000140403 Arhgef10l-010 140544314-140568381 nonsense_mediated_decay
  ENSMUST00000143614 Arhgef10l-012 140591932-140649360 protein_coding
  ENSMUST00000147426 Arhgef10l-009 140575426-140581802 protein_coding
  ENSMUST00000154979 Arhgef10l-008 140593169-140617065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039204ENSMUST00000069623ENSMUST00000097820ENSMUST00000105797ENSMUST00000105798ENSMUST00000105799ENSMUST00000125045ENSMUST00000138493ENSMUST00000147426ENSMUST00000154979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039204 N/A N/A N/A 8.560±1.93 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.926±0.67
ENSMUST00000069623 1.976±0.14 1.311±0.00 5.050±1.23 N/A 8.258±2.92 13.728±2.18 N/A 4.730±0.44 N/A 3.503±0.61 4.811±0.20 3.445±1.32 0.800±0.08 N/A
ENSMUST00000097820 2.976±1.45 2.908±1.35 3.576±0.00 2.220±0.64 0.447±0.00 5.561±0.71 7.497±1.88 8.668±3.39 1.855±0.87 4.145±0.94 2.936±0.61 11.233±4.24 2.576±1.26 0.434±0.12
ENSMUST00000105797 N/A N/A N/A N/A 2.613±0.53 N/A 4.570±0.33 N/A 0.484±0.02 2.304±0.49 3.748±0.54 N/A N/A N/A
ENSMUST00000105798 N/A 0.847±0.00 N/A N/A 1.538±0.00 N/A 6.460±0.00 N/A 3.278±0.21 N/A 5.449±2.86 2.530±0.00 N/A 0.682±0.00
ENSMUST00000105799 N/A N/A N/A 3.470±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125045 N/A N/A N/A 13.222±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.825±0.00
ENSMUST00000138493 N/A 1.897±0.63 N/A 9.394±0.00 N/A 6.244±0.00 N/A N/A 3.351±0.25 N/A N/A 5.411±0.00 4.058±3.80 1.040±0.00
ENSMUST00000147426 N/A N/A N/A N/A 9.507±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154979 N/A N/A N/A N/A N/A N/A N/A N/A 15.670±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A2 CIL_0009A2_0002 VISTA 4:139918145-140519643
CIL_000327 CIL_000327_0002 CGP 4:140026846-140666012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074244 arhgef10lb Rho guanine nucleotide exchange factor (GEF) 10-like b protein_coding Danio_rerio
ENSDARG00000088630 ARHGEF10L (2 of 2) Rho guanine nucleotide exchange factor (GEF) 10-like protein_coding Danio_rerio
ENSG00000074964 ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like protein_coding Homo_sapiens

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