C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097820 Arhgef10l-002 ENSMUSG00000040964 10090 - 4:140514485-140648756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097820 2.976±1.45 2.908±1.35 3.576±0.00 2.220±0.64 0.447±0.00 5.561±0.71 7.497±1.88 8.668±3.39 1.855±0.87 4.145±0.94 2.936±0.61 11.233±4.24 2.576±1.26 0.434±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A2 CIL_0009A2_0002 VISTA 4:139918145-140519643
CIL_000327 CIL_000327_0002 CGP 4:140026846-140666012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167825 ARHGEF10L-005 nonsense_mediated_decay Homo_sapiens 0 2080
ENST00000361221 ARHGEF10L-001 protein_coding Homo_sapiens 0 3450
ENST00000375408 ARHGEF10L-002 protein_coding Homo_sapiens 0 3360
ENST00000375415 ARHGEF10L-003 protein_coding Homo_sapiens 0 4012
ENST00000466782 ARHGEF10L-009 processed_transcript Homo_sapiens 0 313
ENST00000469726 ARHGEF10L-004 processed_transcript Homo_sapiens 0 3518
ENST00000482359 ARHGEF10L-008 processed_transcript Homo_sapiens 0 390
ENST00000495593 ARHGEF10L-006 retained_intron Homo_sapiens 0 643

Loading