C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138493 Arhgef10l-006 ENSMUSG00000040964 10090 - 4:140514485-140577094 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryPlacentaTestisENSMUST00000138493
Transcript ID Adrenal Brain Colon Liver Ovary Placenta Testis
ENSMUST00000138493 1.897±0.63 9.394±0.00 6.244±0.00 3.351±0.25 5.411±0.00 4.058±3.80 1.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A2 CIL_0009A2_0002 VISTA 4:139918145-140519643
CIL_000327 CIL_000327_0002 CGP 4:140026846-140666012

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167825 ARHGEF10L-005 nonsense_mediated_decay Homo_sapiens 0 2819
ENST00000361221 ARHGEF10L-001 protein_coding Homo_sapiens 0 2010
ENST00000375408 ARHGEF10L-002 protein_coding Homo_sapiens 0 2080
ENST00000375415 ARHGEF10L-003 protein_coding Homo_sapiens 0 2010
ENST00000466782 ARHGEF10L-009 processed_transcript Homo_sapiens 0 313
ENST00000469726 ARHGEF10L-004 processed_transcript Homo_sapiens 0 2080
ENST00000482359 ARHGEF10L-008 processed_transcript Homo_sapiens 0 390
ENST00000495593 ARHGEF10L-006 retained_intron Homo_sapiens 0 640

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