C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3-domain kinase binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040990 Sh3kbp1 10090 + X:159627272-159978069 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000073094 Sh3kbp1-004 159627541-159973169 protein_coding
  ENSMUST00000080394 Sh3kbp1-002 159708601-159974167 protein_coding
  ENSMUST00000112447 Sh3kbp1-006 159840964-159975916 processed_transcript
  ENSMUST00000112451 Sh3kbp1-007 159840468-159975664 protein_coding
  ENSMUST00000112453 Sh3kbp1-008 159840481-159974167 protein_coding
  ENSMUST00000112456 Sh3kbp1-001 159627272-159978069 protein_coding
  ENSMUST00000123433 Sh3kbp1-012 159697316-159865400 protein_coding
  ENSMUST00000128185 Sh3kbp1-009 159942693-159975917 processed_transcript
  ENSMUST00000130987 Sh3kbp1-014 159943018-159973190 processed_transcript
  ENSMUST00000134062 Sh3kbp1-011 159941697-159971888 processed_transcript
  ENSMUST00000141354 Sh3kbp1-003 159708601-159973865 nonsense_mediated_decay
  ENSMUST00000142426 Sh3kbp1-010 159942912-159974167 processed_transcript
  ENSMUST00000150433 Sh3kbp1-005 159627541-159921085 retained_intron
  ENSMUST00000152426 Sh3kbp1-013 159919859-159973319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073094ENSMUST00000080394ENSMUST00000112451ENSMUST00000112453ENSMUST00000112456ENSMUST00000128185ENSMUST00000130987ENSMUST00000134062ENSMUST00000141354ENSMUST00000142426ENSMUST00000152426
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073094 3.565±0.92 N/A N/A 11.394±0.00 3.053±0.00 N/A N/A 0.709±0.04 0.684±0.37 N/A N/A 4.718±2.29 4.309±0.16 N/A
ENSMUST00000080394 4.288±0.10 N/A 6.951±2.06 3.316±0.00 6.565±2.72 N/A N/A 2.094±0.89 1.941±0.91 N/A 0.770±0.00 6.347±2.68 4.984±3.85 N/A
ENSMUST00000112451 N/A N/A 3.502±0.25 3.824±0.66 N/A N/A N/A N/A 0.546±0.01 N/A 0.620±0.05 2.986±0.45 1.087±0.13 N/A
ENSMUST00000112453 4.242±0.63 N/A N/A N/A 5.540±0.82 2.151±0.79 N/A 1.661±0.81 0.181±0.03 4.457±0.94 N/A 4.565±0.70 N/A N/A
ENSMUST00000112456 2.931±0.72 3.244±1.61 N/A 1.990±0.00 9.011±7.29 2.717±0.93 N/A 0.741±0.07 0.360±0.24 4.003±1.17 N/A 5.331±2.55 N/A N/A
ENSMUST00000128185 N/A N/A N/A N/A N/A N/A 6.031±1.45 N/A N/A N/A 1.306±0.38 N/A N/A 1.993±0.03
ENSMUST00000130987 N/A N/A N/A N/A N/A N/A 36.248±2.30 N/A N/A N/A N/A N/A 11.518±1.27 19.815±0.00
ENSMUST00000134062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.550±11.10
ENSMUST00000141354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.600±0.00 2.108±0.24 N/A
ENSMUST00000142426 N/A N/A 5.277±0.47 N/A 12.001±0.13 N/A 15.153±4.51 N/A 0.396±0.00 N/A 3.920±0.74 N/A 4.570±1.04 N/A
ENSMUST00000152426 N/A N/A N/A N/A N/A N/A N/A N/A 0.387±0.00 N/A N/A N/A 7.223±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZP CIL_0002ZP_0002 CGP X:159627272-160123351

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005856 IEA cytoskeleton
GO:0005911 IDA cell-cell junction
GO:0006897 IEA endocytosis
GO:0006915 IEA apoptotic process
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0016020 IEA membrane
GO:0016477 ISS cell migration
GO:0017124 IEA SH3 domain binding
GO:0031410 IEA cytoplasmic vesicle
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075853 sh3kbp1 SH3-domain kinase binding protein 1 protein_coding Danio_rerio
ENSG00000147010 SH3KBP1 SH3-domain kinase binding protein 1 protein_coding Homo_sapiens

Loading