C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and tetratricopeptide repeat containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041594 Tmtc4 10090 - 14:122918971-122984035 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037726 Tmtc4-001 122918971-122983283 protein_coding
  ENSMUST00000125900 Tmtc4-008 122924806-122929133 retained_intron
  ENSMUST00000126494 Tmtc4-007 122919906-122936031 processed_transcript
  ENSMUST00000126867 Tmtc4-005 122919731-122983142 protein_coding
  ENSMUST00000128969 Tmtc4-006 122944747-122983275 nonsense_mediated_decay
  ENSMUST00000135917 Tmtc4-002 122932485-122983240 retained_intron
  ENSMUST00000141478 Tmtc4-009 122978126-122984035 processed_transcript
  ENSMUST00000143189 Tmtc4-003 122918978-122983217 nonsense_mediated_decay
  ENSMUST00000148661 Tmtc4-004 122919760-122983142 protein_coding
  ENSMUST00000153496 Tmtc4-010 122973170-122983169 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLungOvaryPlacentaENSMUST00000037726ENSMUST00000126494ENSMUST00000135917
Transcript ID Adipose Bladder Brain Breast Colon Lung Ovary Placenta
ENSMUST00000037726 5.991±0.17 4.678±0.12 12.604±3.36 3.418±0.30 5.680±0.39 3.405±0.17 6.550±1.97 2.622±1.57
ENSMUST00000126494 N/A N/A 14.151±0.00 N/A N/A N/A 13.810±0.00 2.577±0.00
ENSMUST00000135917 N/A N/A N/A N/A N/A N/A 5.393±0.73 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NV CIL_0005NV_0002 CGP 14:122816223-122984035
CIL_0000WK CIL_0000WK_0002 CGP 14:122918971-123627144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020447 tmtc4 transmembrane and tetratricopeptide repeat containing 4 protein_coding Danio_rerio
ENSG00000125247 TMTC4 transmembrane and tetratricopeptide repeat containing 4 protein_coding Homo_sapiens

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