C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000WK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125247-ENSG00000102452 CGP 9606 13:100603927-101416492
GeneTranscriptPositionBiotype
ENSG00000102452 (NALCN)
sodium leak channel, non-selective 		ENST00000251127 (NALCN-001) 101053776-101416355 protein_coding
ENST00000376200 (NALCN-201) 101368545-101399154 protein_coding
ENST00000467264 (NALCN-004) 101116440-101143221 processed_transcript
ENST00000470333 (NALCN-003) 101180373-101416492 processed_transcript
ENST00000497170 (NALCN-002) 101142743-101416462 retained_intron
ENSG00000125247 (TMTC4)
transmembrane and tetratricopeptide repeat containing 4 		ENST00000328767 (TMTC4-009) 100604871-100674774 protein_coding
ENST00000342624 (TMTC4-001) 100603934-100674795 protein_coding
ENST00000376234 (TMTC4-004) 100603927-100674879 protein_coding
ENST00000423847 (TMTC4-008) 100668579-100674879 protein_coding
ENST00000440120 (TMTC4-012) 100663120-100674795 nonsense_mediated_decay
ENST00000462211 (TMTC4-003) 100625453-100642311 processed_transcript
ENST00000475272 (TMTC4-011) 100668579-100675093 protein_coding
ENST00000478272 (TMTC4-007) 100625535-100636608 processed_transcript
ENST00000480433 (TMTC4-005) 100668362-100670735 retained_intron
ENST00000489713 (TMTC4-010) 100624910-100638808 retained_intron
ENST00000496511 (TMTC4-006) 100635065-100636632 processed_transcript
ENSG00000229599 (LINC00411)
long intergenic non-protein coding RNA 411 		ENST00000436722 (LINC00411-001) 100940862-100944364 lincRNA
ENSG00000233009 (NALCN-AS1)
NALCN antisense RNA 1 		ENST00000457843 (NALCN-AS1-001) 100708325-101059286 antisense
ENSG00000237082 (COX5BP6)
cytochrome c oxidase subunit Vb pseudogene 6 		ENST00000454311 (COX5BP6-001) 100623875-100624429 processed_pseudogene
CIL_0000WK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041594-ENSMUSG00000000197 CGP 10090 14:122918971-123627144
GeneTranscriptPositionBiotype
ENSMUSG00000000197 (Nalcn)
sodium leak channel, non-selective 		ENSMUST00000000201 (Nalcn-201) 123276641-123627144 protein_coding
ENSMUSG00000041594 (Tmtc4)
transmembrane and tetratricopeptide repeat containing 4 		ENSMUST00000037726 (Tmtc4-001) 122918971-122983283 protein_coding
ENSMUST00000125900 (Tmtc4-008) 122924806-122929133 retained_intron
ENSMUST00000126494 (Tmtc4-007) 122919906-122936031 processed_transcript
ENSMUST00000126867 (Tmtc4-005) 122919731-122983142 protein_coding
ENSMUST00000128969 (Tmtc4-006) 122944747-122983275 nonsense_mediated_decay
ENSMUST00000135917 (Tmtc4-002) 122932485-122983240 retained_intron
ENSMUST00000141478 (Tmtc4-009) 122978126-122984035 processed_transcript
ENSMUST00000143189 (Tmtc4-003) 122918978-122983217 nonsense_mediated_decay
ENSMUST00000148661 (Tmtc4-004) 122919760-122983142 protein_coding
ENSMUST00000153496 (Tmtc4-010) 122973170-122983169 processed_transcript
ENSMUSG00000085423 (Gm15735)
predicted gene 15735 		ENSMUST00000136187 (Gm15735-001) 122952119-122956343 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WK_0001ENSG00000102452ENST00000251127ENST00000376200ENST00000467264ENST00000470333ENST00000497170ENSG00000125247ENST00000328767ENST00000342624ENST00000376234ENST00000423847ENST00000440120ENST00000462211ENST00000475272ENST00000478272ENST00000480433ENST00000489713ENST00000496511ENSG00000229599ENST00000436722ENSG00000233009ENST00000457843ENSG00000237082ENST00000454311CIL_0000WK_0002ENSMUSG00000000197ENSMUST00000000201ENSMUSG00000041594ENSMUST00000037726ENSMUST00000125900ENSMUST00000126494ENSMUST00000126867ENSMUST00000128969ENSMUST00000135917ENSMUST00000141478ENSMUST00000143189ENSMUST00000148661ENSMUST00000153496ENSMUSG00000085423ENSMUST00000136187
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WK_0001ENSG00000102452ENST00000251127ENST00000376200ENST00000470333ENSG00000125247ENST00000328767ENST00000342624ENST00000376234ENST00000440120ENST00000462211ENST00000489713ENSG00000229599ENST00000436722ENSG00000233009ENST00000457843ENSG00000237082ENST00000454311CIL_0000WK_0002ENSMUSG00000000197ENSMUST00000000201ENSMUSG00000041594ENSMUST00000037726ENSMUST00000126494ENSMUST00000135917ENSMUSG00000085423ENSMUST00000136187
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102452 ENST00000251127 0.048±0.00 0.269±0.00 N/A 7.886±0.11 0.145±0.05 0.140±0.12 0.410±0.20 0.157±0.01 0.114±0.06 0.311±0.00 0.005±0.00 0.236±0.09 0.677±0.02 0.439±0.00
ENST00000376200 0.184±0.00 0.373±0.00 N/A N/A 0.304±0.00 0.655±0.00 N/A 0.267±0.01 0.068±0.00 0.274±0.00 0.059±0.00 N/A N/A N/A
ENST00000467264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470333 N/A N/A N/A N/A N/A N/A 0.283±0.00 0.119±0.00 N/A N/A 0.125±0.00 N/A N/A N/A
ENST00000497170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125247 ENST00000328767 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A 1.898±0.00 N/A N/A
ENST00000342624 1.472±0.00 1.790±0.00 N/A N/A 0.949±0.00 0.344±0.06 0.900±0.00 3.727±0.00 1.124±0.00 0.691±0.05 N/A 3.176±2.20 1.569±1.40 3.372±0.74
ENST00000376234 N/A 0.818±0.00 N/A 5.947±0.81 1.164±0.37 1.077±0.42 0.355±0.00 1.392±0.19 1.121±0.32 0.377±0.00 1.256±0.31 1.657±1.56 1.100±0.43 2.004±0.77
ENST00000423847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440120 N/A N/A 2.575±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462211 N/A N/A N/A N/A N/A N/A 0.541±0.00 N/A N/A N/A 0.852±0.00 N/A 0.648±0.00 3.406±0.00
ENST00000475272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489713 N/A N/A N/A 1.433±0.00 N/A N/A N/A 0.487±0.00 N/A 0.212±0.00 N/A 0.747±0.00 N/A N/A
ENST00000496511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229599 ENST00000436722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00
ENSG00000233009 ENST00000457843 N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.145±0.12 N/A N/A N/A N/A N/A
ENSG00000237082 ENST00000454311 0.242±0.00 0.595±0.00 N/A 0.787±0.00 0.616±0.00 N/A 0.321±0.00 0.689±0.00 N/A N/A N/A 0.851±0.29 0.279±0.00 0.357±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000197 ENSMUST00000000201 0.117±0.12 1.987±0.47 0.126±0.00 5.546±1.90 0.053±0.02 0.200±0.05 0.153±0.05 0.077±0.02 0.008±0.00 0.128±0.04 0.028±0.01 0.726±0.40 0.013±0.01 0.399±0.14
ENSMUSG00000041594 ENSMUST00000037726 5.991±0.17 N/A 4.678±0.12 12.604±3.36 3.418±0.30 5.680±0.39 N/A N/A N/A 3.405±0.17 N/A 6.550±1.97 2.622±1.57 N/A
ENSMUST00000125900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126494 N/A N/A N/A 14.151±0.00 N/A N/A N/A N/A N/A N/A N/A 13.810±0.00 2.577±0.00 N/A
ENSMUST00000126867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.393±0.73 N/A N/A
ENSMUST00000141478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085423 ENSMUST00000136187 N/A 0.231±0.09 0.127±0.06 0.228±0.04 0.133±0.00 N/A 0.223±0.00 0.300±0.19 0.119±0.06 0.136±0.05 0.140±0.00 0.352±0.20 0.184±0.00 0.077±0.01

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