C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and tetratricopeptide repeat containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125247 TMTC4 9606 - 13:100603927-100675093 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328767 TMTC4-009 100604871-100674774 protein_coding
  ENST00000342624 TMTC4-001 100603934-100674795 protein_coding
  ENST00000376234 TMTC4-004 100603927-100674879 protein_coding
  ENST00000423847 TMTC4-008 100668579-100674879 protein_coding
  ENST00000440120 TMTC4-012 100663120-100674795 nonsense_mediated_decay
  ENST00000462211 TMTC4-003 100625453-100642311 processed_transcript
  ENST00000475272 TMTC4-011 100668579-100675093 protein_coding
  ENST00000478272 TMTC4-007 100625535-100636608 processed_transcript
  ENST00000480433 TMTC4-005 100668362-100670735 retained_intron
  ENST00000489713 TMTC4-010 100624910-100638808 retained_intron
  ENST00000496511 TMTC4-006 100635065-100636632 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328767ENST00000342624ENST00000376234ENST00000440120ENST00000462211ENST00000489713
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328767 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A 1.898±0.00 N/A N/A
ENST00000342624 1.472±0.00 1.790±0.00 N/A N/A 0.949±0.00 0.344±0.06 0.900±0.00 3.727±0.00 1.124±0.00 0.691±0.05 N/A 3.176±2.20 1.569±1.40 3.372±0.74
ENST00000376234 N/A 0.818±0.00 N/A 5.947±0.81 1.164±0.37 1.077±0.42 0.355±0.00 1.392±0.19 1.121±0.32 0.377±0.00 1.256±0.31 1.657±1.56 1.100±0.43 2.004±0.77
ENST00000440120 N/A N/A 2.575±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462211 N/A N/A N/A N/A N/A N/A 0.541±0.00 N/A N/A N/A 0.852±0.00 N/A 0.648±0.00 3.406±0.00
ENST00000489713 N/A N/A N/A 1.433±0.00 N/A N/A N/A 0.487±0.00 N/A 0.212±0.00 N/A 0.747±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NV CIL_0005NV_0001 CGP 13:100530164-100675093
CIL_0000WK CIL_0000WK_0001 CGP 13:100603927-101416492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020447 tmtc4 transmembrane and tetratricopeptide repeat containing 4 protein_coding Danio_rerio
ENSMUSG00000041594 Tmtc4 transmembrane and tetratricopeptide repeat containing 4 protein_coding Mus_musculus

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