C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane and tetratricopeptide repeat containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037726 Tmtc4-001 ENSMUSG00000041594 10090 - 14:122918971-122983283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLungOvaryPlacentaENSMUST00000037726
Transcript ID Adipose Bladder Brain Breast Colon Lung Ovary Placenta
ENSMUST00000037726 5.991±0.17 4.678±0.12 12.604±3.36 3.418±0.30 5.680±0.39 3.405±0.17 6.550±1.97 2.622±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NV CIL_0005NV_0002 CGP 14:122816223-122984035
CIL_0000WK CIL_0000WK_0002 CGP 14:122918971-123627144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078681 tmtc4-201 protein_coding Danio_rerio 0 460
ENSDART00000127214 tmtc4-001 protein_coding Danio_rerio 0 460
ENST00000328767 TMTC4-009 protein_coding Homo_sapiens 0 2106
ENST00000342624 TMTC4-001 protein_coding Homo_sapiens 0 2859
ENST00000376234 TMTC4-004 protein_coding Homo_sapiens 0 2915
ENST00000440120 TMTC4-012 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000462211 TMTC4-003 processed_transcript Homo_sapiens 0 1345
ENST00000478272 TMTC4-007 processed_transcript Homo_sapiens 0 560
ENST00000489713 TMTC4-010 retained_intron Homo_sapiens 0 1125
ENST00000510294 CTB-14A14.2-001 processed_pseudogene Homo_sapiens 0 1057

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