C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002J0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077009-ENSDARG00000077009 CGP 7955 13:31204563-31292318
GeneTranscriptPositionBiotype
ENSDARG00000077009 (wdfy4)
WDFY family member 4 		ENSDART00000112653 (wdfy4-201) 31204563-31292318 protein_coding
ENSDART00000137709 (wdfy4-001) 31248313-31249107 protein_coding
ENSDART00000139394 (wdfy4-003) 31208649-31231877 protein_coding
ENSDART00000145287 (wdfy4-002) 31239149-31241562 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002J0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128815-ENSG00000128815 CGP 9606 10:48684876-48982956
GeneTranscriptPositionBiotype
ENSG00000128815 (WDFY4)
WDFY family member 4 		ENST00000265453 (WDFY4-002) 48821093-48982956 protein_coding
ENST00000325239 (WDFY4-201) 48709706-48982955 protein_coding
ENST00000360890 (WDFY4-008) 48684876-48736242 protein_coding
ENST00000374161 (WDFY4-006) 48802738-48824169 protein_coding
ENST00000465910 (WDFY4-003) 48946047-48982956 processed_transcript
ENST00000490507 (WDFY4-005) 48978345-48982956 processed_transcript
ENST00000497480 (WDFY4-004) 48968984-48976959 processed_transcript
ENSG00000165383 (LRRC18)
leucine rich repeat containing 18 		ENST00000298124 (LRRC18-201) 48909488-48935190 protein_coding
ENST00000374160 (LRRC18-001) 48909483-48914232 protein_coding
ENSG00000228403 (RP11-563N6.6)
 ENST00000423256 (RP11-563N6.6-001) 48878022-48878649 sense_intronic
ENSG00000228754 (RP11-534L6.3)
 ENST00000434320 (RP11-534L6.3-001) 48745545-48746128 processed_pseudogene
ENSG00000233665 (RP11-523O18.5)
 ENST00000428825 (RP11-523O18.5-001) 48976554-48993046 antisense
ENST00000610464 (RP11-523O18.5-002) 48976742-48980115 retained_intron
ENSG00000241577 (RP11-523O18.7)
 ENST00000430438 (RP11-523O18.7-001) 48883955-48935213 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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CIL_0002J0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051506-ENSMUSG00000051506 CGP 10090 14:32959547-33185508
GeneTranscriptPositionBiotype
ENSMUSG00000041673 (Lrrc18)
leucine rich repeat containing 18 		ENSMUST00000038956 (Lrrc18-001) 32991382-33015292 protein_coding
ENSMUST00000120588 (Lrrc18-005) 32991403-33008678 protein_coding
ENSMUST00000120866 (Lrrc18-002) 32991398-33009396 protein_coding
ENSMUST00000120951 (Lrrc18-006) 32991458-33014155 protein_coding
ENSMUST00000123822 (Lrrc18-004) 32991446-33008839 protein_coding
ENSMUST00000123910 (Lrrc18-003) 32995265-33008459 processed_transcript
ENSMUSG00000051506 (Wdfy4)
WD repeat and FYVE domain containing 4 		ENSMUST00000061753 (Wdfy4-201) 32959547-33185066 protein_coding
ENSMUST00000130509 (Wdfy4-001) 32959570-33185066 protein_coding
ENSMUST00000132153 (Wdfy4-002) 33018284-33023337 protein_coding
ENSMUST00000159606 (Wdfy4-003) 33162749-33185508 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002J0_0001ENSDARG00000077009ENSDART00000112653ENSDART00000137709ENSDART00000139394ENSDART00000145287CIL_0002J0_0002ENSG00000128815ENST00000265453ENST00000325239ENST00000360890ENST00000374161ENST00000465910ENST00000490507ENST00000497480ENSG00000165383ENST00000298124ENST00000374160ENSG00000228403ENST00000423256ENSG00000228754ENST00000434320ENSG00000233665ENST00000428825ENST00000610464ENSG00000241577ENST00000430438CIL_0002J0_0003ENSMUSG00000041673ENSMUST00000038956ENSMUST00000120588ENSMUST00000120866ENSMUST00000120951ENSMUST00000123822ENSMUST00000123910ENSMUSG00000051506ENSMUST00000061753ENSMUST00000130509ENSMUST00000132153ENSMUST00000159606
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002J0_0001ENSDARG00000077009ENSDART00000112653ENSDART00000139394CIL_0002J0_0002ENSG00000128815ENST00000265453ENST00000325239ENST00000360890ENST00000374161ENST00000465910ENST00000490507ENST00000497480ENSG00000165383ENST00000298124ENST00000374160ENSG00000228403ENST00000423256ENSG00000228754ENST00000434320ENSG00000233665ENST00000428825ENSG00000241577ENST00000430438CIL_0002J0_0003ENSMUSG00000041673ENSMUST00000038956ENSMUST00000120866ENSMUST00000120951ENSMUST00000123822ENSMUSG00000051506ENSMUST00000061753ENSMUST00000130509
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000077009 ENSDART00000112653 N/A N/A N/A 0.213±0.19 N/A N/A 0.950±0.11 1.362±1.30 0.250±0.00 N/A 0.269±0.00 N/A N/A N/A
ENSDART00000137709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139394 N/A N/A N/A 0.405±0.00 N/A N/A 0.794±0.00 N/A 0.167±0.00 N/A 0.271±0.00 N/A N/A N/A
ENSDART00000145287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128815 ENST00000265453 N/A 5.803±0.00 0.242±0.00 0.335±0.00 0.514±0.16 0.269±0.16 0.114±0.00 0.347±0.29 0.064±0.00 0.846±0.08 0.117±0.05 0.395±0.14 0.779±0.12 2.302±0.51
ENST00000325239 N/A N/A N/A N/A 0.274±0.09 N/A 0.095±0.00 0.161±0.00 0.052±0.00 0.215±0.00 0.097±0.00 0.125±0.06 0.366±0.00 N/A
ENST00000360890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 0.222±0.00 N/A N/A
ENST00000374161 0.203±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465910 N/A 3.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.861±0.00
ENST00000490507 N/A N/A N/A N/A N/A 0.735±0.00 N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A
ENST00000497480 N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165383 ENST00000298124 N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 1.601±0.00 N/A 0.188±0.18 N/A 1.057±0.00
ENST00000374160 0.017±0.00 0.043±0.00 0.030±0.00 0.081±0.00 0.017±0.00 N/A N/A 0.026±0.00 0.159±0.00 0.922±0.00 N/A 0.010±0.00 N/A N/A
ENSG00000228403 ENST00000423256 N/A 0.377±0.00 N/A 0.059±0.00 N/A 2.641±0.00 N/A N/A N/A N/A N/A N/A N/A 0.238±0.14
ENSG00000228754 ENST00000434320 N/A 0.137±0.00 N/A N/A 0.101±0.00 0.046±0.00 0.090±0.00 N/A N/A 0.102±0.00 0.084±0.00 N/A N/A 0.058±0.02
ENSG00000233665 ENST00000428825 0.414±0.00 N/A N/A 0.442±0.00 N/A 0.273±0.00 0.182±0.00 N/A 0.136±0.00 N/A 0.108±0.00 N/A N/A N/A
ENST00000610464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241577 ENST00000430438 N/A 0.208±0.00 N/A N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041673 ENSMUST00000038956 0.069±0.00 0.051±0.00 0.040±0.00 0.052±0.00 0.149±0.05 0.102±0.04 0.040±0.01 0.089±0.03 0.023±0.01 N/A 0.021±0.01 0.465±0.26 0.093±0.06 14.461±0.00
ENSMUST00000120588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120866 0.678±0.40 0.199±0.05 N/A 0.041±0.00 0.204±0.13 0.198±0.04 0.173±0.07 0.237±0.18 0.053±0.03 0.568±0.26 0.045±0.00 2.118±0.67 0.291±0.10 296.301±72.13
ENSMUST00000120951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A 0.171±0.00 N/A
ENSMUST00000123822 N/A N/A N/A N/A 0.137±0.01 0.230±0.00 N/A 0.203±0.00 0.064±0.04 N/A 0.072±0.00 N/A 0.252±0.00 N/A
ENSMUST00000123910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051506 ENSMUST00000061753 N/A 0.091±0.00 N/A 0.031±0.00 N/A N/A 0.087±0.00 0.080±0.00 N/A N/A 0.079±0.02 N/A 0.074±0.02 N/A
ENSMUST00000130509 0.282±0.00 0.453±0.37 0.443±0.00 0.117±0.00 0.680±0.00 0.651±0.19 0.315±0.05 0.413±0.19 0.219±0.18 4.474±0.00 0.067±0.02 1.004±0.32 0.109±0.03 0.382±0.02
ENSMUST00000132153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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