C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DDB1 and CUL4 associated factor 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041966 Dcaf17 10090 + 2:71055328-71099142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064141 Dcaf17-007 71055781-71099142 protein_coding
  ENSMUST00000102701 Dcaf17-004 71055852-71088644 protein_coding
  ENSMUST00000112159 Dcaf17-003 71055784-71083458 protein_coding
  ENSMUST00000112167 Dcaf17-006 71055846-71090278 nonsense_mediated_decay
  ENSMUST00000130292 Dcaf17-002 71055328-71086618 protein_coding
  ENSMUST00000132619 Dcaf17-009 71075342-71082053 processed_transcript
  ENSMUST00000135357 Dcaf17-008 71055758-71078164 protein_coding
  ENSMUST00000136299 Dcaf17-005 71063424-71078145 nonsense_mediated_decay
  ENSMUST00000154704 Dcaf17-001 71055744-71095858 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064141ENSMUST00000102701ENSMUST00000112167ENSMUST00000130292ENSMUST00000154704
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064141 N/A 4.275±0.42 N/A N/A 1.626±0.00 1.666±0.47 N/A 1.218±0.00 1.253±0.01 N/A 0.699±0.05 2.574±0.14 3.378±0.80 3.071±0.53
ENSMUST00000102701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.657±0.00 N/A
ENSMUST00000112167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.172±0.00
ENSMUST00000130292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.442±0.08
ENSMUST00000154704 1.483±0.69 1.706±0.26 1.743±0.47 1.697±0.45 1.657±0.25 1.045±0.09 0.382±0.23 0.708±0.42 1.604±0.55 1.404±0.38 0.320±0.18 2.055±0.60 1.601±0.46 0.894±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S9 CIL_0004S9_0002 CGP 2:70712407-71055583
CIL_0002PA CIL_0002PA_0002 CGP 2:70964561-71099142
CIL_0003IN CIL_0003IN_0003 CGP 2:71055328-71142926

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074909 dcaf17 ddb1 and cul4 associated factor 17 protein_coding Danio_rerio
ENSG00000115827 DCAF17 DDB1 and CUL4 associated factor 17 protein_coding Homo_sapiens

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