C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154704 Dcaf17-001 ENSMUSG00000041966 10090 + 2:71055744-71095858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000154704
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000154704 1.483±0.69 1.706±0.26 1.743±0.47 1.697±0.45 1.657±0.25 1.045±0.09 0.382±0.23 0.708±0.42 1.604±0.55 1.404±0.38 0.320±0.18 2.055±0.60 1.601±0.46 0.894±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S9 CIL_0004S9_0002 CGP 2:70712407-71055583
CIL_0002PA CIL_0002PA_0002 CGP 2:70964561-71099142
CIL_0003IN CIL_0003IN_0003 CGP 2:71055328-71142926

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339506 DCAF17-003 protein_coding Homo_sapiens 0 911
ENST00000375255 DCAF17-001 protein_coding Homo_sapiens 0 2043
ENST00000431110 DCAF17-008 protein_coding Homo_sapiens 0 774
ENST00000436317 DCAF17-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000442778 METTL8-006 protein_coding Homo_sapiens 0.00000006 62
ENST00000453846 METTL8-016 protein_coding Homo_sapiens 0.0000008 58
ENST00000460188 METTL8-007 processed_transcript Homo_sapiens 0.0000002 60
ENST00000462821 METTL8-005 processed_transcript Homo_sapiens 0.0000002 60
ENST00000468592 DCAF17-002 processed_transcript Homo_sapiens 0 944
ENST00000480855 DCAF17-006 retained_intron Homo_sapiens 0 381
ENST00000490217 DCAF17-005 processed_transcript Homo_sapiens 0 544
ENST00000495925 DCAF17-010 processed_transcript Homo_sapiens 0 350
ENST00000498486 DCAF17-009 retained_intron Homo_sapiens 0 401
ENST00000539783 DCAF17-201 protein_coding Homo_sapiens 0 1275
ENST00000611110 DCAF17-202 protein_coding Homo_sapiens 0 911
ENST00000612742 METTL8-201 protein_coding Homo_sapiens 0.0000009 62

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