C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064141 Dcaf17-007 ENSMUSG00000041966 10090 + 2:71055781-71099142 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000064141
Transcript ID Adrenal Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000064141 4.275±0.42 1.626±0.00 1.666±0.47 1.218±0.00 1.253±0.01 0.699±0.05 2.574±0.14 3.378±0.80 3.071±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S9 CIL_0004S9_0002 CGP 2:70712407-71055583
CIL_0002PA CIL_0002PA_0002 CGP 2:70964561-71099142
CIL_0003IN CIL_0003IN_0003 CGP 2:71055328-71142926

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339506 DCAF17-003 protein_coding Homo_sapiens 0 900
ENST00000375255 DCAF17-001 protein_coding Homo_sapiens 0 1999
ENST00000431110 DCAF17-008 protein_coding Homo_sapiens 0 730
ENST00000436317 DCAF17-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000442778 METTL8-006 protein_coding Homo_sapiens 0.00000006 62
ENST00000453846 METTL8-016 protein_coding Homo_sapiens 0.0000008 58
ENST00000460188 METTL8-007 processed_transcript Homo_sapiens 0.0000002 60
ENST00000462821 METTL8-005 processed_transcript Homo_sapiens 0.0000002 60
ENST00000468592 DCAF17-002 processed_transcript Homo_sapiens 0 900
ENST00000480855 DCAF17-006 retained_intron Homo_sapiens 0 381
ENST00000490217 DCAF17-005 processed_transcript Homo_sapiens 0 544
ENST00000495925 DCAF17-010 processed_transcript Homo_sapiens 0 350
ENST00000498486 DCAF17-009 retained_intron Homo_sapiens 0 398
ENST00000539783 DCAF17-201 protein_coding Homo_sapiens 0 1275
ENST00000611110 DCAF17-202 protein_coding Homo_sapiens 0 900
ENST00000612742 METTL8-201 protein_coding Homo_sapiens 0.0000009 62

Loading