C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polybromo 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112098 Pbrm1-201 ENSMUSG00000042323 10090 + 14:31019138-31118901 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000112098
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000112098 2.610±1.02 4.349±0.20 4.137±2.18 4.568±0.85 1.329±0.21 0.962±0.07 3.302±0.95 7.992±1.66 1.449±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0001890 IMP placenta development
GO:0003682 IDA chromatin binding
GO:0005634 IC nucleus
GO:0007507 IMP heart development
GO:0008285 IEA negative regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296302 PBRM1-008 protein_coding Homo_sapiens 0 5125
ENST00000337303 PBRM1-009 protein_coding Homo_sapiens 0 3897
ENST00000356770 PBRM1-001 protein_coding Homo_sapiens 0 3897
ENST00000394830 PBRM1-002 protein_coding Homo_sapiens 0 2228
ENST00000409057 PBRM1-003 protein_coding Homo_sapiens 0 3897
ENST00000409114 PBRM1-006 protein_coding Homo_sapiens 0 6488
ENST00000409767 PBRM1-005 protein_coding Homo_sapiens 0 6180
ENST00000410007 PBRM1-007 protein_coding Homo_sapiens 0 2209
ENST00000412587 PBRM1-020 nonsense_mediated_decay Homo_sapiens 0 2209
ENST00000420148 PBRM1-013 protein_coding Homo_sapiens 0 1118
ENST00000423351 PBRM1-019 protein_coding Homo_sapiens 0 3877
ENST00000424867 PBRM1-014 protein_coding Homo_sapiens 0 226
ENST00000431678 PBRM1-018 protein_coding Homo_sapiens 0 1068
ENST00000439181 PBRM1-015 protein_coding Homo_sapiens 0 226
ENST00000446103 PBRM1-004 protein_coding Homo_sapiens 0 4619
ENST00000449505 PBRM1-016 protein_coding Homo_sapiens 0 580
ENST00000450271 PBRM1-017 protein_coding Homo_sapiens 0 769
ENST00000458294 PBRM1-012 protein_coding Homo_sapiens 0 431
ENST00000462207 PBRM1-010 retained_intron Homo_sapiens 0 1387
ENST00000480064 PBRM1-011 retained_intron Homo_sapiens 0 926

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