C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polybromo 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112094 Pbrm1-003 ENSMUSG00000042323 10090 + 14:31019170-31118967 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000112094
Transcript ID Adipose Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112094 3.493±0.92 1.877±0.41 2.640±0.27 1.801±0.21 1.405±0.00 3.823±0.00 2.775±0.61 2.782±0.32 1.845±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0001890 IMP placenta development
GO:0001974 TAS blood vessel remodeling
GO:0003007 TAS heart morphogenesis
GO:0003349 TAS epicardium-derived cardiac endothelial cell differentiation
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0008285 ISS negative regulation of cell proliferation
GO:0016568 IEA chromatin modification
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0060948 TAS cardiac vascular smooth muscle cell development
GO:0060979 TAS vasculogenesis involved in coronary vascular morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296302 PBRM1-008 protein_coding Homo_sapiens 0 4626
ENST00000337303 PBRM1-009 protein_coding Homo_sapiens 0 4630
ENST00000356770 PBRM1-001 protein_coding Homo_sapiens 0 6957
ENST00000394830 PBRM1-002 protein_coding Homo_sapiens 0 2726
ENST00000409057 PBRM1-003 protein_coding Homo_sapiens 0 5609
ENST00000409114 PBRM1-006 protein_coding Homo_sapiens 0 3897
ENST00000409767 PBRM1-005 protein_coding Homo_sapiens 0 3901
ENST00000410007 PBRM1-007 protein_coding Homo_sapiens 0 2774
ENST00000412587 PBRM1-020 nonsense_mediated_decay Homo_sapiens 0 3134
ENST00000420148 PBRM1-013 protein_coding Homo_sapiens 0 1092
ENST00000423351 PBRM1-019 protein_coding Homo_sapiens 0 4785
ENST00000424867 PBRM1-014 protein_coding Homo_sapiens 0 226
ENST00000431678 PBRM1-018 protein_coding Homo_sapiens 0 1068
ENST00000439181 PBRM1-015 protein_coding Homo_sapiens 0 226
ENST00000446103 PBRM1-004 protein_coding Homo_sapiens 0 2591
ENST00000449505 PBRM1-016 protein_coding Homo_sapiens 0 580
ENST00000450271 PBRM1-017 protein_coding Homo_sapiens 0 769
ENST00000458294 PBRM1-012 protein_coding Homo_sapiens 0 431
ENST00000462207 PBRM1-010 retained_intron Homo_sapiens 0 1387
ENST00000480064 PBRM1-011 retained_intron Homo_sapiens 0 926

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