C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042499 Hoxd11 10090 + 2:74679557-74687016 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048086 Hoxd11-002 74679557-74687016 processed_transcript
  ENSMUST00000142312 Hoxd11-001 74682323-74684168 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000048086ENSMUST00000142312
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000048086 2.315±0.00 0.006±0.00 N/A 0.009±0.00 0.577±0.00 0.008±0.01 N/A 0.248±0.00 0.051±0.03 0.049±0.03
ENSMUST00000142312 N/A 0.020±0.00 2.091±0.58 N/A 1.491±0.00 0.056±0.00 0.072±0.04 0.798±0.10 N/A 0.129±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_0001HF CIL_0001HF_0002 CGP 2:74675013-74687016
CIL_00017N CIL_00017N_0002 CGP 2:74679557-74695105

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001656 IGI metanephros development
GO:0001658 IGI branching involved in ureteric bud morphogenesis
GO:0001759 IGI organ induction
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007338 IGI single fertilization
GO:0007389 IGI pattern specification process
GO:0009952 IGI anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0010720 IGI positive regulation of cell development
GO:0030326 IGI embryonic limb morphogenesis
GO:0032330 IGI regulation of chondrocyte differentiation
GO:0032332 IGI positive regulation of chondrocyte differentiation
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0042733 IGI embryonic digit morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048589 IGI developmental growth
GO:0060272 IGI embryonic skeletal joint morphogenesis
GO:0060351 IGI cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059267 hoxd11a homeo box D11a protein_coding Danio_rerio
ENSG00000128713 HOXD11 homeobox D11 protein_coding Homo_sapiens

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