C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048086 Hoxd11-002 ENSMUSG00000042499 10090 + 2:74679557-74687016 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverOvaryPlacentaTestisENSMUST00000048086
Transcript ID Bladder Brain Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000048086 2.315±0.00 0.006±0.00 0.009±0.00 0.577±0.00 0.008±0.01 0.248±0.00 0.051±0.03 0.049±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_0001HF CIL_0001HF_0002 CGP 2:74675013-74687016
CIL_00017N CIL_00017N_0002 CGP 2:74679557-74695105

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249499 HOXD9-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000249504 HOXD11-001 protein_coding Homo_sapiens 0 787
ENST00000311177 HOXB9-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000451024 NKX1-2-001 protein_coding Homo_sapiens 0.000002 58
ENST00000490088 HOXD10-002 processed_transcript Homo_sapiens 0 652
ENST00000498438 HOXD11-003 processed_transcript Homo_sapiens 0 1129
ENST00000549469 HOXD10-003 processed_transcript Homo_sapiens 0 652
ENST00000613849 HOXD9-201 protein_coding Homo_sapiens 0.0000001 62
ENST00000619244 HOXD11-201 protein_coding Homo_sapiens 0 510

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