C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142312 Hoxd11-001 ENSMUSG00000042499 10090 + 2:74682323-74684168 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungOvaryTestisENSMUST00000142312
Transcript ID Brain Colon Kidney Liver Lung Ovary Testis
ENSMUST00000142312 0.020±0.00 2.091±0.58 1.491±0.00 0.056±0.00 0.072±0.04 0.798±0.10 0.129±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_0001HF CIL_0001HF_0002 CGP 2:74675013-74687016
CIL_00017N CIL_00017N_0002 CGP 2:74679557-74695105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001656 IGI metanephros development
GO:0001658 IGI branching involved in ureteric bud morphogenesis
GO:0001759 IGI organ induction
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007338 IGI single fertilization
GO:0007389 IGI pattern specification process
GO:0009952 IGI anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0010720 IGI positive regulation of cell development
GO:0030326 IGI embryonic limb morphogenesis
GO:0032330 IGI regulation of chondrocyte differentiation
GO:0032332 IGI positive regulation of chondrocyte differentiation
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0042733 IGI embryonic digit morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048589 IGI developmental growth
GO:0060272 IGI embryonic skeletal joint morphogenesis
GO:0060351 IGI cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249499 HOXD9-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000249504 HOXD11-001 protein_coding Homo_sapiens 0 1426
ENST00000311177 HOXB9-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000451024 NKX1-2-001 protein_coding Homo_sapiens 0.000002 58
ENST00000490088 HOXD10-002 processed_transcript Homo_sapiens 0 414
ENST00000498438 HOXD11-003 processed_transcript Homo_sapiens 0 411
ENST00000549469 HOXD10-003 processed_transcript Homo_sapiens 0 414
ENST00000613849 HOXD9-201 protein_coding Homo_sapiens 0.0000001 62
ENST00000619244 HOXD11-201 protein_coding Homo_sapiens 0 549

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