C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111836 Smg7-001 ENSMUSG00000042772 10090 - 1:152838870-152902646 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryTestisENSMUST00000111836
Transcript ID Adrenal Breast Colon Liver Lung Ovary Testis
ENSMUST00000111836 3.205±0.46 2.196±0.00 3.453±0.75 1.880±0.00 2.638±0.37 6.581±0.00 21.836±1.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0008150 ND biological_process
GO:0051721 ISS protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347615 SMG7-002 protein_coding Homo_sapiens 0 2623
ENST00000367537 SMG7-001 protein_coding Homo_sapiens 0 5576
ENST00000367538 SMG7-008 retained_intron Homo_sapiens 0 337
ENST00000419169 SMG7-003 protein_coding Homo_sapiens 0 3530
ENST00000440812 SMG7-005 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000444547 SMG7-015 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000493045 SMG7-006 retained_intron Homo_sapiens 0 307
ENST00000495321 SMG7-009 processed_transcript Homo_sapiens 0 355
ENST00000507406 SMG7-016 processed_transcript Homo_sapiens 0 817
ENST00000507469 SMG7-010 protein_coding Homo_sapiens 0 5057
ENST00000507691 SMG7-014 protein_coding Homo_sapiens 0 514
ENST00000508461 SMG7-011 protein_coding Homo_sapiens 0 3025
ENST00000515829 SMG7-017 protein_coding Homo_sapiens 0 3976

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