C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073441 Smg7-002 ENSMUSG00000042772 10090 - 1:152836995-152902622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073441 2.897±1.35 5.581±1.88 3.635±0.02 3.876±2.79 3.828±1.41 1.704±0.00 2.852±0.51 2.935±0.99 2.949±1.17 2.690±0.63 1.543±0.41 5.207±2.97 4.229±0.88 7.879±1.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0008150 ND biological_process
GO:0051721 ISS protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347615 SMG7-002 protein_coding Homo_sapiens 0 6634
ENST00000367537 SMG7-001 protein_coding Homo_sapiens 0 2497
ENST00000367538 SMG7-008 retained_intron Homo_sapiens 0 337
ENST00000419169 SMG7-003 protein_coding Homo_sapiens 0 2394
ENST00000440812 SMG7-005 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000444547 SMG7-015 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000493045 SMG7-006 retained_intron Homo_sapiens 0 311
ENST00000495321 SMG7-009 processed_transcript Homo_sapiens 0 355
ENST00000507406 SMG7-016 processed_transcript Homo_sapiens 0 817
ENST00000507469 SMG7-010 protein_coding Homo_sapiens 0 2584
ENST00000507691 SMG7-014 protein_coding Homo_sapiens 0 514
ENST00000508461 SMG7-011 protein_coding Homo_sapiens 0 3947
ENST00000515829 SMG7-017 protein_coding Homo_sapiens 0 3897

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