C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043560 Smg7-003 ENSMUSG00000042772 10090 - 1:152836996-152878168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043560 3.149±0.00 2.937±0.00 2.872±0.00 9.881±1.91 3.168±0.00 2.442±0.00 2.460±0.67 4.835±0.00 1.750±0.28 2.672±0.02 2.645±1.76 3.712±1.14 2.146±0.54 3.974±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0045111 IEA intermediate filament cytoskeleton
GO:0051721 IEA protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347615 SMG7-002 protein_coding Homo_sapiens 0 2497
ENST00000367537 SMG7-001 protein_coding Homo_sapiens 0 6770
ENST00000367538 SMG7-008 retained_intron Homo_sapiens 0 241
ENST00000419169 SMG7-003 protein_coding Homo_sapiens 0 3469
ENST00000440812 SMG7-005 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000444547 SMG7-015 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000493045 SMG7-006 retained_intron Homo_sapiens 0 307
ENST00000493609 SMG7-004 retained_intron Homo_sapiens 0 228
ENST00000495321 SMG7-009 processed_transcript Homo_sapiens 0 355
ENST00000502375 SMG7-013 protein_coding Homo_sapiens 0 291
ENST00000507406 SMG7-016 processed_transcript Homo_sapiens 0 817
ENST00000507469 SMG7-010 protein_coding Homo_sapiens 0 4859
ENST00000507691 SMG7-014 protein_coding Homo_sapiens 0 715
ENST00000508461 SMG7-011 protein_coding Homo_sapiens 0 3025
ENST00000515829 SMG7-017 protein_coding Homo_sapiens 0 3818

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